Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271885g00017 ATGAGTTCAGGCTCGTGGAATGAGCTACAGCAGCTGCTGCTGCTGCTTGTTCTTGTTTATGGGAGTGCAGCAATGCAACAAAACTCAAATTGCAGTACACGGTGTGGCTCCGTGGAAATCCCGTTCCCGTTTGGCACCAGCGAGAGTTGTTGCCTCGACAGCTCCTTTCTCGTCTCTTGCAACCGCACTTCTTCCGGCGGCTTCATCCCGTATTTGAGTCCCGGCAACATATCCGTGCTGAACATCTCGCTCGACGGCGAAATGCGCATTTTAGCAGGAGCTGCTAGAGGCTGTTACGACCGTAACGGCACACAAAATAATGAAACTAGTGTGAGTTGGAGAATTGACTTGAGCCAATATTTCAGCCTCTCATCGAGTCGAAACAAGTTAACAGCAGTTGGTTGCAACGCACTTGGAGAAGTTATAGCGTATGATCCAGACGGAGTAAACTACACCACGGGGTGCTTGTCTACGTGCCTCAGAATCAATGATACAACTAATGGAGTGTGCAATGGTGCTGGTTGTTGCCAGAGTCCGATACCCGCACATGGACGATTATCCGGGATTTTCTATAATTCTTTTAAAGCCTTCCTCGATCGCAACGATGTGTTTGGCTTCAACCCCTGCGGTTATGCCTTTGTGGCGGAGGATGGAGCCTACAGCTACTCCTCCACAGACCTTGCCAACTTCCCCCACGAAAGTTTTCCAGTGGTGCTGGATTGGAGTGTGGGGAACCTCTCGTGCCTAGAAGCGAAGAAGAACGCCTCTAATTACGCGTGTAAAGCTGAGAACAGTGAATGTTACACTTCAAGCAGTGGACTTGGTTACCTTTGCAACTGCTCTACTGGTTTTCGGGGAAATCCTTATCTCCTCCATGGTTGCCAAGATATTGATGAATGCGTGGACAAGAAATTAAACGATTGCTATAGTATAGCAAAATGCAAGAACCTACCGGGTAGCTTTAACTGTTCATGTCCAGAAGGATACGTTGGAAATGGGAAAGAAAATGGAACAAGATGCAGTCGTGTTAGTGTGGGTGTCATAACAATACTTGTGATAAGCTTTTTTGTGTATTGGAGAACGAAGGAAACGAGGCTAAATAAACTTAAGGAACATTTTTTTCAACAAAATGGTGGCTTCATCCTACAGCAACACATTTCAAGACTTAGAGGGTCAATAGAAACAGCTAAAGTCTTCACTGTGGAAGAATTAAAGAAGGCCACCAACAACTTTGATGAAGTCAAGATCTTAGGCAAAGGGGGTCAAGGAACAGTTTATAAAGGATTACTATCAGATAATAGAACCGTTGCAATTAAAAAATCCAAAATCAGTGACTCAAGCCAAGTTGAGCAATTCATCAATGAAGTTGTGCTGCTTTCCCAAATCAACCATAGAAATGTGGTTAGACTCTTAGGCTGTTGCTTAGAGACAGAAGTTCCATTACTTGTTTATGAGTTCATCTCCAATGGCACCATTTTTGAACATCTTCATGGTGATAACCAATCTTTCAAACTTACTTGGGCAACAAGATTGAGAATAGCAATAGAAACTGCTGGGGCCTTAGCATACTTGCACTCTGGTATTTCTATGCCAATCATACACAGAGACATCAAAACCACCAATATTCTTCTTGATGCTGATCTCACGGCAAAGATTTCTGATTTCGGAGCTTCAAAGATTGTTCCTCTAGATCAAACTGAGTTAACCACTTTGGTGCAGGGGACAATGGGTTATCTTGACCCTGAATACATGCACACCAGCCAGTTAACTGAGAAAAGTGATGTTTATAGTTTTGGAGTCGTCCTAGCAGAGCTTCTGACAGGAAAGAAGGCACTCTCTTTCACTGATCCGGAGGTTAGAAACCTTGTGGCATACTTTGGTAGTTCAATGGAAGAAGGGCGGTTACTTGAGATTGTGGACAAACATATCATAAATGAGGCAAAGGTTGAGCACCTTATGGAATTTGCCAATGTTGCAAAGCAGTGTTTGAGAGTGAAGAGGGAAGAAAGGCCTACCATGAAAGAAGTTGTATCAGAACTTGAGGGGCTTAGGGTAGTAGCTGGAGAGAAACACCGACGAGAAAATAGTGACAAATCATGTTCAGAAGAGACTAAAAGCTTGTTAAAAGTACCATCATCCTCTGTCTCTGTCTCTGATGTTGAAAGTTCTAAGTTTGATAGCATAAGTCATGACTGTCAGGTTTTTATGTCGATGGTGGGTGGTGGAAGATGA 2232 0.4373 MSSGSWNELQQLLLLLVLVYGSAAMQQNSNCSTRCGSVEIPFPFGTSESCCLDSSFLVSCNRTSSGGFIPYLSPGNISVLNISLDGEMRILAGAARGCYDRNGTQNNETSVSWRIDLSQYFSLSSSRNKLTAVGCNALGEVIAYDPDGVNYTTGCLSTCLRINDTTNGVCNGAGCCQSPIPAHGRLSGIFYNSFKAFLDRNDVFGFNPCGYAFVAEDGAYSYSSTDLANFPHESFPVVLDWSVGNLSCLEAKKNASNYACKAENSECYTSSSGLGYLCNCSTGFRGNPYLLHGCQDIDECVDKKLNDCYSIAKCKNLPGSFNCSCPEGYVGNGKENGTRCSRVSVGVITILVISFFVYWRTKETRLNKLKEHFFQQNGGFILQQHISRLRGSIETAKVFTVEELKKATNNFDEVKILGKGGQGTVYKGLLSDNRTVAIKKSKISDSSQVEQFINEVVLLSQINHRNVVRLLGCCLETEVPLLVYEFISNGTIFEHLHGDNQSFKLTWATRLRIAIETAGALAYLHSGISMPIIHRDIKTTNILLDADLTAKISDFGASKIVPLDQTELTTLVQGTMGYLDPEYMHTSQLTEKSDVYSFGVVLAELLTGKKALSFTDPEVRNLVAYFGSSMEEGRLLEIVDKHIINEAKVEHLMEFANVAKQCLRVKREERPTMKEVVSELEGLRVVAGEKHRRENSDKSCSEETKSLLKVPSSSVSVSDVESSKFDSISHDCQVFMSMVGGGR 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271885g00017 743 FunFam Wall-associated receptor kinase 2 487 704 - -
Stsc271885g00017 743 SUPERFAMILY Protein kinase-like (PK-like) 394 681 IPR011009 -
Stsc271885g00017 743 ProSiteProfiles Protein kinase domain profile. 411 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271885g00017 743 FunFam Wall-associated receptor kinase 2 246 294 - -
Stsc271885g00017 743 Gene3D Transferase(Phosphotransferase) domain 1 487 708 - -
Stsc271885g00017 743 Gene3D Phosphorylase Kinase; domain 1 383 486 - -
Stsc271885g00017 743 CDD EGF_CA 296 331 - -
Stsc271885g00017 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 532 544 IPR008271 GO:0004672|GO:0006468
Stsc271885g00017 743 CDD STKc_IRAK 417 683 - -
Stsc271885g00017 743 ProSitePatterns Calcium-binding EGF-like domain signature. 296 323 IPR018097 GO:0005509
Stsc271885g00017 743 SUPERFAMILY EGF/Laminin 295 334 - -
Stsc271885g00017 743 SMART serkin_6 411 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271885g00017 743 SMART egf_5 247 295 IPR000742 -
Stsc271885g00017 743 SMART egf_5 299 341 IPR000742 -
Stsc271885g00017 743 Pfam Protein kinase domain 412 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271885g00017 743 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 694 IPR045274 GO:0007166
Stsc271885g00017 743 SMART egfca_6 296 341 IPR001881 GO:0005509
Stsc271885g00017 743 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 314 325 IPR000152 -
Stsc271885g00017 743 FunFam Fibrillin 2 295 336 - -
Stsc271885g00017 743 Pfam Calcium-binding EGF domain 296 340 IPR001881 GO:0005509
Stsc271885g00017 743 ProSiteProfiles EGF-like domain profile. 296 341 IPR000742 -
Stsc271885g00017 743 Gene3D Laminin 249 335 - -
Stsc271885g00017 743 Pfam Wall-associated receptor kinase galacturonan-binding 31 89 IPR025287 GO:0030247
Stsc271885g00017 743 FunFam Wall-associated receptor kinase 2 381 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271885g00017 Stsc-Chr271885 126139 130892 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271885g00017 8 730 Receptor kinase-like Gene Family AT1G21230 45.225 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc271885g00017 Pkinase 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271885g00017 - - aip:107607783 870.152