Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271885g00016 ATGGGTTCAAGCTGGTGGAATGAGGTATGGCTGCTGGTTCTTGCTCTTGTTTGGGTCCTTTTTGAGAGTGCAGCAGATGCAGCCACACAACCCAACTCAAATTGCAGTACACAGTGTGGCTCCCTGAAAATTCCTTTCCCATTTGGCACAACCGAGAGTTGCTACCTGGACTCTTCCTTTCTCATCTCTTGCAACCACACTTCTTCGGGCCCCACCCCGTACCTGAGTACCGACAACATAACGGTACTGGACATCTCGCTCGATGGCGAAATGCGCGTTTCAGCAGCAGTCGCTACAGGCTGCTACGACAGCAACGGCACGCGAATTAACGCAACCAGTGAGAATCGGAATTACAACTTGTCAAGAAACCACCACTACTTGAGCGTCTCATCGAGTCGAAACAAGTTAACAGCTGTTGGTTGCAACACAATTGGAGAAATTATAGGGTTTGATGATACAGCGGGATTAAGTTACACAACGGGGTGCGTGTCTAGTTGCCTCAGAATCAATGATACAACTGATGGGGTGTGCAACGGTGCTGGTTGTTGCCAGAGTCCGATACCCGCACATGGACGATTATCGGGGATTTCATATGCTTCTGTTAAGGGATTCGTCCATCGCAACCAAGTGTTCGGGTTCAACCCCTGCGGTTATGCCTTTGTGGCGGAGGAAGGAGCCTACAGCTTCTCCTCCACAGACCTTACCAACTTCCATTACCAAAGTCTTCCAATGGTGCTGGATTGGAGTGTGGGGAACCTCTCGTGCCAGGAAGCGAAGAAGAACGCTTCTAATTACGCGTGTAAAGCTGAGAACAGTGAATGTTACAATTCAAGCAGTGGATTTGGTTACCTTTGCAACTGCTCTACTGGTTTTCGGGGAAATCCTTATCTCCTTGGTGGCTGCCAGGATATTAATGAATGCCTGCACAAGGAATCAAACGATTGCTACAGTGGAGCAATATGCAAGAATATACCAGTTGGTAGTTATACCTGTTCATGTCCAAAAGGATATGAAGGAGATGGGAGAGAAAATGGAACAAAGTGCCGTCGAGTTTGTGTGGGTGTGATAGCATTACTTGTGATAAGCTTTTATGTGTATTGGGGAATGAAGGAAAAGAGGCTAAATAAACTTAAGGAACAGTTTTTCCAACAAAATGGCGGCTTCATCCTACTAGAACAGATTTCAAGACATAGAGGGTCAATGGAAATAGCCAAAGTCTTCACTGTGGATGAATTAAAGAAGGCCACCAACAACTTTGATGAATCCAAGATCTTAGGCAAAGGGGGTCAAGGAACAGTTTATAAAGGATTACTATCAGATAACAGAACCGTTGCAATTAAAAGATCCAAAATCAGTGGCTCAACCCAAGTTGAGCAATTCATCAACGAAGTTGTGTTGCTTTCCCAAATCAACCATAGAAATGTGGTTAGACTCTTAGGTTGTTGCTTAGAGACAGAAGTTCCCTTACTTGTCTACGAGCTCATCTCCAATGGTACCATTTTTCAACATCTTCATGATCATAACCAATCTTTGAAACTTACTTGGGGAACAAGATTGAGAATAGCAATAGAAACTGCTGGGCCTTAG 1587 0.4499 MGSSWWNEVWLLVLALVWVLFESAADAATQPNSNCSTQCGSLKIPFPFGTTESCYLDSSFLISCNHTSSGPTPYLSTDNITVLDISLDGEMRVSAAVATGCYDSNGTRINATSENRNYNLSRNHHYLSVSSSRNKLTAVGCNTIGEIIGFDDTAGLSYTTGCVSSCLRINDTTDGVCNGAGCCQSPIPAHGRLSGISYASVKGFVHRNQVFGFNPCGYAFVAEEGAYSFSSTDLTNFHYQSLPMVLDWSVGNLSCQEAKKNASNYACKAENSECYNSSSGFGYLCNCSTGFRGNPYLLGGCQDINECLHKESNDCYSGAICKNIPVGSYTCSCPKGYEGDGRENGTKCRRVCVGVIALLVISFYVYWGMKEKRLNKLKEQFFQQNGGFILLEQISRHRGSMEIAKVFTVDELKKATNNFDESKILGKGGQGTVYKGLLSDNRTVAIKRSKISGSTQVEQFINEVVLLSQINHRNVVRLLGCCLETEVPLLVYELISNGTIFQHLHDHNQSLKLTWGTRLRIAIETAGP 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271885g00016 528 Pfam Protein tyrosine and serine/threonine kinase 422 524 IPR001245 GO:0004672|GO:0006468
Stsc271885g00016 528 FunFam Wall-associated receptor kinase 2 389 494 - -
Stsc271885g00016 528 FunFam Wall-associated receptor kinase 2 253 302 - -
Stsc271885g00016 528 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 527 IPR045274 GO:0007166
Stsc271885g00016 528 SMART egfca_6 303 349 IPR001881 GO:0005509
Stsc271885g00016 528 Pfam Wall-associated receptor kinase galacturonan-binding 35 93 IPR025287 GO:0030247
Stsc271885g00016 528 ProSiteProfiles EGF-like domain profile. 303 343 IPR000742 -
Stsc271885g00016 528 FunFam Fibrillin 2 303 345 - -
Stsc271885g00016 528 CDD EGF_CA 303 340 - -
Stsc271885g00016 528 ProSiteProfiles Protein kinase domain profile. 419 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271885g00016 528 SUPERFAMILY EGF/Laminin 301 349 - -
Stsc271885g00016 528 SMART egf_5 306 349 IPR000742 -
Stsc271885g00016 528 SMART egf_5 254 302 IPR000742 -
Stsc271885g00016 528 Gene3D Transferase(Phosphotransferase) domain 1 396 527 - -
Stsc271885g00016 528 Pfam Calcium-binding EGF domain 303 348 IPR001881 GO:0005509
Stsc271885g00016 528 SUPERFAMILY Protein kinase-like (PK-like) 405 526 IPR011009 -
Stsc271885g00016 528 Gene3D Laminin 254 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271885g00016 Stsc-Chr271885 116014 120007 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271885g00016 14 527 Receptor kinase-like Gene Family AT1G21250 42.963 1.13e-123 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc271885g00016 PK_Tyr_Ser-Thr 4.1e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271885g00016 - - aip:107607783 698.738