Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271885g00013 ATGGGTACTACACATTCATCAAAGGTGCTTCTTCTTCATGTTCTTGTGTGGATGATTTGTTCAGCAGGACATGATGAATTCGACTCATGCCCCCAAAACTGCAAACATAGTTGCGGCTCCGTGAGGATTCCGTTCCCGTTTGGGATCACAAAGGAGTGCTCCCTCAACGCAAAATTCCTCATCAACTGCACCAACAGTGTCCCATACTTGCCTGATTTTTTGATAGAAGAAGAAAACGACGATCCACTGCAAGTGCTAAGCATATCCGTGGACGCCGCCGAACTCCGCGTTTCGTTGCCGGTAGCTAGTGATTGCTACTACAACAACACCGGAATTCCAAGAGGCAAGAGATTCGGCAACAAATTCATCAATAATGGAACCGATCAGCAACAAATTGCTACACATGAAGGATCAAATCAAACAGCTAAAGTCTTCACTGTGGAAGAGCTAAAGAAAGCCACCAACAACTTCGATGAATGCAATGTGTTAGGCCAAGGGGGTCAAGGAACGGTTTACAAAGGAACATTATTTGACAACAGAGTTGTGGCAATCAAAATGTCGAAAATCAGCGACAAAAGTCAAATTGAGCATTTCATCAATGAAGTGGTTGTACTCTCCCAAATCAACCATAGAAATGTGGTTAAGCTCTTGGGTTGTTGCTTAGAGACAGAGGTTCCTCTGCTTGTTTATGAGTTCATTCCCAATGGTACTATCTATGAGCATCTTCATCATGGCCATACTCAAATATCATCAAAGCTTACTTGGAAAGCAAGATTGAGAATAGCAGCAGAAACTGCTGGAGCTTTGGCTTATTTGCATTTTGCAACTTCCATACCAATCATACACAGAGATGTCAAAACTTGTAACATACTTCTTGATCGTGATCTAACCGCAAAGGTTTCTGATTTCGGAGCTTCAAGGATTGTTCCTCTTGATAAAACACAGATAACCACATTGGTGCTAGGAACATTAGGGTATCTTGACGCTGAATACTTTCACACAAGCAAGTTGACAGAGAAAAGCGATGTTTATAGTTTCGGAGTTGTGCTAGCGGAGCTACTTACGGCGAAGAAAGCTCTCACATCTGATGTGCCTGAAGATGAGAAGAACCTTGCAATGCACTTTGTGTTTTCACTGGAAGAGGGACGTTTGCTTCAAATTGTGGACAAGCTCATACTTGAAGAGGCAAAACAAGAGGCAGTTGTTGAATTTGCTAACATTGCAAAGAGATGTTTGAAGTTGAAGGGAGAGAAGAGACCTACAATGAAACAAGTGGCAATGGAACTTGAGAGACTTAGAGTTGAGGAATGTGGAAAAGTGGTTACTCCTTCAGAAGCAGAAACTATTGCATTATCATCATCTGCTTTTGATGTTGAAGATGGGGGTGGTGTAATAAGTGATATTAGTATTGGGGTTGAGGGCTTAAACCTAGATTCTATGTCATTGGGCAGTGGAAGATGA 1461 0.4209 MGTTHSSKVLLLHVLVWMICSAGHDEFDSCPQNCKHSCGSVRIPFPFGITKECSLNAKFLINCTNSVPYLPDFLIEEENDDPLQVLSISVDAAELRVSLPVASDCYYNNTGIPRGKRFGNKFINNGTDQQQIATHEGSNQTAKVFTVEELKKATNNFDECNVLGQGGQGTVYKGTLFDNRVVAIKMSKISDKSQIEHFINEVVVLSQINHRNVVKLLGCCLETEVPLLVYEFIPNGTIYEHLHHGHTQISSKLTWKARLRIAAETAGALAYLHFATSIPIIHRDVKTCNILLDRDLTAKVSDFGASRIVPLDKTQITTLVLGTLGYLDAEYFHTSKLTEKSDVYSFGVVLAELLTAKKALTSDVPEDEKNLAMHFVFSLEEGRLLQIVDKLILEEAKQEAVVEFANIAKRCLKLKGEKRPTMKQVAMELERLRVEECGKVVTPSEAETIALSSSAFDVEDGGGVISDISIGVEGLNLDSMSLGSGR 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271885g00013 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Stsc271885g00013 486 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 31 435 IPR045274 GO:0007166
Stsc271885g00013 486 Pfam Protein tyrosine and serine/threonine kinase 161 429 IPR001245 GO:0004672|GO:0006468
Stsc271885g00013 486 SUPERFAMILY Protein kinase-like (PK-like) 138 430 IPR011009 -
Stsc271885g00013 486 Pfam Wall-associated receptor kinase galacturonan-binding 34 97 IPR025287 GO:0030247
Stsc271885g00013 486 FunFam Wall-associated receptor kinase 2 233 450 - -
Stsc271885g00013 486 Gene3D Transferase(Phosphotransferase) domain 1 233 449 - -
Stsc271885g00013 486 SMART serkin_6 157 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271885g00013 486 CDD STKc_IRAK 163 432 - -
Stsc271885g00013 486 Gene3D Phosphorylase Kinase; domain 1 119 232 - -
Stsc271885g00013 486 FunFam Wall-associated receptor kinase 2 127 232 - -
Stsc271885g00013 486 ProSiteProfiles Protein kinase domain profile. 157 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271885g00013 Stsc-Chr271885 93091 94993 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271885g00013 130 435 Receptor kinase-like Gene Family AT1G21230 60.131 1.16e-124 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc271885g00013 PK_Tyr_Ser-Thr 4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271885g00013 - - gmx:100798027 455.677