Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271885g00011 ATGGGTGCTATACATTCATCAAAGGTGCTTCTTGTTCTTGTTCTTGTTCTTGTTCTTGTGTGGCTGGTTTGTTCAGCATCACATGATGAATTCGAAGAAGGCACCAAAAACTGCAGACATAGTTGCGGCTCAGTGAGTATTCCGTTCCCGTTTGGGACCACAAAGGAGTGCTCCCTCGACGCTAAATTCCTCATCAACTGCACCAACAATGTCCCATACTTGCCCAATTCATTGACAGATAACGATAACGATCCCCTACAAGTGCTAAGCATATCAGTGGACGCTGCTGAACTCCGCGTTTCATTGCCGGTATCCAGTGATTGCTACCACAACGACACCAGAAGCAAGAAATTAGGCAAATTCTTCAATAATGAAACTGATCAGGGGGCCTATTTTGCAAATTATTATAGCATCTCATCCACCCGAAACATTTTCACAACCGTTGGCTGTAACACGCTGGGAATGATGGTGTTGGAGTATGACTATGTCTATTCAGACAGTTATAAACCCGGTGCTAAGACATGTTTATCCTACTGCAACGACGATGATGCAATGAATGGGTCCTGTAATGGCACAGGTTGTTGCCATATTGACATGCCCGAGTTCGAGCTCAAACAAGAAGTGTCAACCATACTAAAATTTGGTTTTGAAAACTCCATAATCAACAACAGTGATGTGATTGACTACAGCCCTTGCGGTTATGCGTTTGTGGCGGAGAAAGGACAGTACCATTTTGTGTCTGCAGATCTGACGAACAACAAGTTGAAGCATTCTAAGTTCCCGGTGGTGCTGGATTGGAGTGTTGGCAACCAGACATGTGAAGAAGCCAAGAAGAACACTTCCAGCTATGCTTGTAAAGGCCCAAAAACCACGTGTCACCCTTCAGGGAAGCGTCTTGGTTATCTATGCAAATGCCGTCCTGGTTTTCAGGGGAACCCTTATCACCCCTATGGTTGCCCACAAGATATTAATGAGTGCCATGGACCCCATGATTGCGTCAAAGAAGCAACATGCATCAACGACCCACCAGGGAACTACACCTGTATAAGTGTAACTGTGATAGCTCTACTCATGGCATGTTCTTACATTTATTGGGCAATGAAAAAGAGGAAGCTCATTAAAATGAAAGAACACTTCTTTCAACAAAATGGTGGCCTACTGTTACAGCAACAAATTGCTACACATGAAGGATCAAATCAAACAGCCAAAGTCTTCACTGTGGAAGAGTTAAAGAAAGCCACCAACAACTTCGATGAATGCAATGTGTTAGGCCAAGGGGGTCAAGGAACGGTTTACAAAGGAACATTATTTGACAACAGAGTTGTGGCAATCAAAATGTCGAAAATCAGCGACAAAAGTCAAATTGAGCATTTCATCAATGAAGTGGTTGTACTCTCCCAAATCAACCATAGAAATGTGGTTAAGCTCTTGGGTTGTTGCTTAGAGACAGAGGTTCCTCTGCTTGTTTATGAGTTCATTCCCAATGGTACTATCTATGAGCATCTTCATCATGGCCATACTCAAATATCATCAAAGCTTACTTGGAAAGCAAGATTGAGAATAGCAGCAGAAACTGCTGGAGCTTTGGCTTACTTGCATTTTGCAACTTCCATACCCATCATACATAGAGATGTCAAAACTTGTAACATACTTCTTGATCGTGATCTAACCGCAAAGGTTTCTGATTTCGGAGCTTCGAGGATTGTTCCTCTTGATAAAACACAGATAACCACATTGGTGCAAGGAACATTAGGGTATCTTGACCCTGAATACTTTCACACAAGCAAGTTGACTGAGAAAAGTGATGTTTATAGTTTCGGAGTTGTGCTAGCGGAGTTACTTACGGCGAAGAAAGCTCTCACCTTTGATGTTCCTGAAGATGAGAAGAACCTTGCAATGCATTTTGTGTTTTCAGTGGAAGAGGGACGTTTGCTTCAAATTGTGGACAAGCACATACTTGAAGAGGCAAAAGAAGAAGCAGTTGTTGAATTTGCCAATATTGCAAAGAGATGTTTGAAGTTGAAGGGAGAGGAGAGACCTACAATGAAACAAGTGGCAATGGAACTTGAGAGACTTAGAGTTGAGGAATGTGGAAAAGTGGTTACTCCTTCAGAAGCAGACACTATTGCATCATCATCATCTGCTTTTGATGTTGAAGATGGCGGTGGTGTAATAAGTGATATTAGTATTGGGGTTGAGGGCTTATACCTAGATTCTATGTCATTGGGTAGTGGAAGATGA 2241 0.4239 MGAIHSSKVLLVLVLVLVLVWLVCSASHDEFEEGTKNCRHSCGSVSIPFPFGTTKECSLDAKFLINCTNNVPYLPNSLTDNDNDPLQVLSISVDAAELRVSLPVSSDCYHNDTRSKKLGKFFNNETDQGAYFANYYSISSTRNIFTTVGCNTLGMMVLEYDYVYSDSYKPGAKTCLSYCNDDDAMNGSCNGTGCCHIDMPEFELKQEVSTILKFGFENSIINNSDVIDYSPCGYAFVAEKGQYHFVSADLTNNKLKHSKFPVVLDWSVGNQTCEEAKKNTSSYACKGPKTTCHPSGKRLGYLCKCRPGFQGNPYHPYGCPQDINECHGPHDCVKEATCINDPPGNYTCISVTVIALLMACSYIYWAMKKRKLIKMKEHFFQQNGGLLLQQQIATHEGSNQTAKVFTVEELKKATNNFDECNVLGQGGQGTVYKGTLFDNRVVAIKMSKISDKSQIEHFINEVVVLSQINHRNVVKLLGCCLETEVPLLVYEFIPNGTIYEHLHHGHTQISSKLTWKARLRIAAETAGALAYLHFATSIPIIHRDVKTCNILLDRDLTAKVSDFGASRIVPLDKTQITTLVQGTLGYLDPEYFHTSKLTEKSDVYSFGVVLAELLTAKKALTFDVPEDEKNLAMHFVFSVEEGRLLQIVDKHILEEAKEEAVVEFANIAKRCLKLKGEERPTMKQVAMELERLRVEECGKVVTPSEADTIASSSSAFDVEDGGGVISDISIGVEGLYLDSMSLGSGR 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271885g00011 746 Gene3D Phosphorylase Kinase; domain 1 382 492 - -
Stsc271885g00011 746 FunFam Wall-associated receptor kinase 2 493 711 - -
Stsc271885g00011 746 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 34 695 IPR045274 GO:0007166
Stsc271885g00011 746 FunFam Wall-associated receptor kinase 2 387 492 - -
Stsc271885g00011 746 Gene3D Laminin 268 360 - -
Stsc271885g00011 746 CDD EGF_CA 322 349 - -
Stsc271885g00011 746 SMART serkin_6 417 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271885g00011 746 CDD STKc_IRAK 423 692 - -
Stsc271885g00011 746 ProSiteProfiles Protein kinase domain profile. 417 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271885g00011 746 Pfam Wall-associated receptor kinase galacturonan-binding 38 100 IPR025287 GO:0030247
Stsc271885g00011 746 Pfam Protein tyrosine and serine/threonine kinase 421 689 IPR001245 GO:0004672|GO:0006468
Stsc271885g00011 746 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672|GO:0006468
Stsc271885g00011 746 SUPERFAMILY Protein kinase-like (PK-like) 399 690 IPR011009 -
Stsc271885g00011 746 Gene3D Transferase(Phosphotransferase) domain 1 493 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271885g00011 Stsc-Chr271885 56678 60116 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271885g00011 8 696 Receptor kinase-like Gene Family AT1G21250 44.231 0.0 554
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc271885g00011 PK_Tyr_Ser-Thr 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271885g00011 - - ahf:112763839 784.637