Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271885g00009 ATGCCGGTGGTTGTTCCATCGGTTTTGAAAACCGCCGCTAAACCGTTTGCCCGCACGTGTATAGACGGCGATGCGGCCACGTCAGCATTGAGTACCCGTTTGGGACCACAAAAGGAGTGTTCCCTCGACACCAAATTCCTCGCCAACTGCACCAACAATAATGTCCCATACTTGCAAGACAATGACCTCCCTCTTCTAAGCATCTCCCTCGACCAAGGTGAAATCCGCGTTTCCTTGCCGGTAGCCAGTGATTGCTACTACACCAACAGCAGCAGCAAGAAGGGCCACTTCTTCAACAATGAAACCGATCAGTTCATGTTTTTTGAAAATTATAGCATCTCAACGAGCAGAAACGTGTTCACAACGGTTGGTTGTCAAACACTTGGATTAGTGGTGGGGAGGAGTTATTATTCCTATGAAGATGATGAGTTCATCAGTACGCAAGCGTTTCCTAAGGCATGCTTATCGTACTGCGAGAAGAGTAGTGAAGTTAATGCAAAGGATGGGGAGTGCGAGGGCACCGGTTGTTGCAATACTACCGTACCCGAGGACTCACAGGGACATGGCTTGTCGATGATGTCTTATTTTTTTGAAAATTCGGTATTAAACAACTCTCAAGTGATTGATTACAACCCTTGTGGCCATGCGTTTCTGGTGGAAAATGGAACCTACACTTTTGAGACCGCACATCTCCACAAGCTGGAGAACACTAGCTTCCCGGTGGTGCTTGATTGGACTGTAGGAGAGAACCAGATTTGTGAAGGAGCCAAGAAAAACCATTCCACCTACGCTTGTAAGGCGCAGTACAGCACTTGTGTAGATTCAAAGAAGCTCCCTGGCTACCTTTGCAAATGTCTTCCTGGTTTTCAGGGTAACCCTTATCTCCATCATGGTTGCAAAGATATTGATGAGTGCAAGGAAGCCAATAAATTTTGCGTAGAAGAAGCAACATCATGCAAGAACTTTATTGGGAGCTACAGTTGCGTGTGTCCCGAAGGATACACTGGAAATGGCAAAATTCATAAAACTGGAAATGAAACACATGGATGCACTCGTCGTCCTGCTCCTTCAGAAATCAACATCGTCAATACGAAAACACCCAAACAACACAACAGACAGAAAACCGCTTTATTGTTTGTCAGTGTAAGCATCTTAGCGTTGTTCTTGGTGATCTTCAATGTGTATTGTGGATTGAAAAAAAGAGAGCTCAATAAAATTAAACAACAATTTTTTCAACAGAACGGTGGCCTACTACTGCAACAAAAAATTGCCAAACAGAAAGGTTCAATTGAAACAGCTAAAATCTTTAGCATAGAAGAGCTAAAAAAGGCCACCAACAACTTTGATGAAGGCAAGATCTTAGGCCGAGGTGGCTATGGAATAGTTTACAAAGGAATCTTACAAGACAATACAACTGTTGCAATCAAAAAGTCCAAAATCAGTGATCAAAGCCAGATAGAACAATTCATCAATGAGGTGATTATACTTTCCCAAATCAACCATACAAATGTGGTTAAACTCTTAGGGTGTTGCTTAGAGACACAAGTCCCATTGCTTGTTTATGAATTCATTCAAGGTGGTACTCTTTATGATCATCTTCATGGTCACAACCAATCTTTAAAGCTTAACTGGAAAACAAGATTGAGAATAGCTTCAGAAACTGCTGGGGCTTTAGCATACTTACATTCTGCAACTTGTCCATCCGTCATACACAGAGATGTGAAGACTACTAACATACTTCTTGATCATAATCTCAAAGCAAAGGTTTCTGATTTCGGAGCTTCAAAGATTGTTCCTCTTGATCAAACTCAGTTTACCACTTTGGTGCAAGGGACAATAGGATACCTTGACCCCGAATACTTCCACACAAGCCACCTAACAGAAAAGAGTGATGTCTATAGTTTCGGAGTCGTTCTAGCAGAGTTACTAACAGGACGAAAAGCACTTTGTTTTGATCTGCCTGAGAATGATAGAAACCTTGCAATGTACTTCATTTCTTCAGTGAATAAGGGTCTCTTGCTTCAGATTCTGGACAATCAGATAACAAATGGGACAAAGCCAGAGCAAGTGATGGAATTTGCCAATATTGCAAAACGATGTTTGAGGTTGAAAGGAGAAGAAAGACCTACCATGAAAGAAGTTGCAACTGAACTTGAGGGGCTTAGAATTATGGAAAACCACAGGTGGGAAACTGAAAGATCATCTTTGGAAGAGACTAAAAATTTGGTCAATCCACCATCATCATCATCCTTATCCTCCGCTTTTTACGGTGAAGATGGAGTTTATGGAAGGGACATTATTTCTAGGTTGGAAAGCATAGGTCAAATTACTATTTCATTAGGTGGGAGGTGA 2352 0.4196 MPVVVPSVLKTAAKPFARTCIDGDAATSALSTRLGPQKECSLDTKFLANCTNNNVPYLQDNDLPLLSISLDQGEIRVSLPVASDCYYTNSSSKKGHFFNNETDQFMFFENYSISTSRNVFTTVGCQTLGLVVGRSYYSYEDDEFISTQAFPKACLSYCEKSSEVNAKDGECEGTGCCNTTVPEDSQGHGLSMMSYFFENSVLNNSQVIDYNPCGHAFLVENGTYTFETAHLHKLENTSFPVVLDWTVGENQICEGAKKNHSTYACKAQYSTCVDSKKLPGYLCKCLPGFQGNPYLHHGCKDIDECKEANKFCVEEATSCKNFIGSYSCVCPEGYTGNGKIHKTGNETHGCTRRPAPSEINIVNTKTPKQHNRQKTALLFVSVSILALFLVIFNVYCGLKKRELNKIKQQFFQQNGGLLLQQKIAKQKGSIETAKIFSIEELKKATNNFDEGKILGRGGYGIVYKGILQDNTTVAIKKSKISDQSQIEQFINEVIILSQINHTNVVKLLGCCLETQVPLLVYEFIQGGTLYDHLHGHNQSLKLNWKTRLRIASETAGALAYLHSATCPSVIHRDVKTTNILLDHNLKAKVSDFGASKIVPLDQTQFTTLVQGTIGYLDPEYFHTSHLTEKSDVYSFGVVLAELLTGRKALCFDLPENDRNLAMYFISSVNKGLLLQILDNQITNGTKPEQVMEFANIAKRCLRLKGEERPTMKEVATELEGLRIMENHRWETERSSLEETKNLVNPPSSSSLSSAFYGEDGVYGRDIISRLESIGQITISLGGR 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271885g00009 783 SMART egf_5 252 300 IPR000742 -
Stsc271885g00009 783 SMART egf_5 304 351 IPR000742 -
Stsc271885g00009 783 ProSitePatterns Serine/Threonine protein kinases active-site signature. 569 581 IPR008271 GO:0004672|GO:0006468
Stsc271885g00009 783 SUPERFAMILY EGF/Laminin 301 339 - -
Stsc271885g00009 783 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 319 330 IPR000152 -
Stsc271885g00009 783 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 79 728 IPR045274 GO:0007166
Stsc271885g00009 783 FunFam Wall-associated receptor kinase 2 251 299 - -
Stsc271885g00009 783 CDD STKc_IRAK 454 721 - -
Stsc271885g00009 783 ProSiteProfiles Protein kinase domain profile. 448 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271885g00009 783 ProSitePatterns Calcium-binding EGF-like domain signature. 301 328 IPR018097 GO:0005509
Stsc271885g00009 783 FunFam Wall-associated receptor kinase 2 418 523 - -
Stsc271885g00009 783 Pfam Calcium-binding EGF domain 301 339 IPR001881 GO:0005509
Stsc271885g00009 783 FunFam Wall-associated receptor kinase 2 524 741 - -
Stsc271885g00009 783 Gene3D Laminin 252 303 - -
Stsc271885g00009 783 ProSitePatterns Protein kinases ATP-binding region signature. 454 477 IPR017441 GO:0005524
Stsc271885g00009 783 SMART egfca_6 257 300 IPR001881 GO:0005509
Stsc271885g00009 783 SMART egfca_6 301 351 IPR001881 GO:0005509
Stsc271885g00009 783 Gene3D Transferase(Phosphotransferase) domain 1 524 744 - -
Stsc271885g00009 783 Pfam Protein tyrosine and serine/threonine kinase 451 718 IPR001245 GO:0004672|GO:0006468
Stsc271885g00009 783 FunFam Fibrillin 2 300 342 - -
Stsc271885g00009 783 Gene3D Laminin 304 342 - -
Stsc271885g00009 783 CDD EGF_CA 301 336 - -
Stsc271885g00009 783 SMART serkin_6 448 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271885g00009 783 Gene3D Phosphorylase Kinase; domain 1 419 523 - -
Stsc271885g00009 783 ProSiteProfiles EGF-like domain profile. 301 337 IPR000742 -
Stsc271885g00009 783 SUPERFAMILY Protein kinase-like (PK-like) 434 736 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271885g00009 Stsc-Chr271885 44301 49970 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271885g00009 73 732 Receptor kinase-like Gene Family AT1G21230 45.482 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc271885g00009 PK_Tyr_Ser-Thr 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271885g00009 - - ahf:112763858 1080.09