Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271885g00007 ATGACGATGATGATGACGACAAAGGAGGAAGAAGAAGTCGATGACGATGAATGCAGAGAAGAAGAAGGCGTTGATGAAGCGCATGAAACACGCGCTTGTGATGAGAGTGGGGGTGATATTATTAACTTGCTTGGTTTTCCACTTGTTGTCAGTTTAAGCATGTTAGTGCTAATCGTGGCAAGCTTTAATGTGTATAGCGGATTGAAGAAAAGAAAGTTAAACAAACTTAAAGAACGGTTTTTTCAACAAAATGGTGGTCTATTGCTGCAACAGAAAATTGAAAAACATAGAGGTTCAATTCAGACAGCTAAAATATTCAGCATAGAAGAGCTAAAAAAGGCCACCAACAACTTTGATGAAGACAAGATCTTGGGCCGGGGAGGCCATGGAATAGTTTACAAAGGAGTCTTACAAGACAATACAACTGTGGCAATCAAAAAGTCCAAAATCAGTGATCAATGCCAGATAGAACAATTCATCAATGAGGTGATTATACTTTCCCAAATTAACCATGCAAATGTGGTTAAACTCTTAGGGTGTTGCTTAGAGACACAAGTCCCGTTGCTTGTTTATGAATTCATTCAAGGTGGCACTCTTTATGATCATCTTCATGCTCAGAACCGATCTTTAAAGCTTGACTGGAAAACAAGATTGAGAATATCTTCAGAAACTGCTGGGGTTTTGGCATACTTGCATTCTGCTACTTCCCCACCAATCATACATAGGGATGTTAAGACTATCAACATACTTCTTGATCATAATCTCAGAGCAAAAGTTGCTGATTTTGGAGCTTCAAAGATTGTTCCTCTTGATCAAACTCAGTTTACCACTTTGGTGCAAGGGACGACAATAGGGTACCTTGACCCTGAATACTTCCACACAAGCCACTTGACAGAAAAGAGTGATGTGTATAGTTTCGGAGTCGTTCTAGCAGAGCTGCTAACGGGACGAAAAGCACTTTGTTTTGATATGCCTGAGGATGATAGAAACCTTGCTATGTACTTCATTTCTTCAATGAATAAGGGTGGTTTACTTCACATTCTGGACAATCAGATAACAGATGAGGCAAAACCTGAGCAAGTGATGGAATTTTCCAATATTGCAAAACGATGTTTGAATTTGAAGGGAGAAGAAAGACCTACCATGAAAGAAGTTGCAACTGAACTTGAGGGACTTAGAATGATGGAAAACCAGAGGTGGGAAAGTGATAGATCGTGTTTGAATGAGACTGAAAATATGCTCAGTGCATCATCATCATCATTATCCTCCGCTTTTTACAGTGAAGATGGATCTCATGGAAGGGGCATTATTTCTAGGTTGGAAAGCATAGGTCAGATTACTGTTTCATTAGGTGGAAGGTGA 1362 0.3957 MTMMMTTKEEEEVDDDECREEEGVDEAHETRACDESGGDIINLLGFPLVVSLSMLVLIVASFNVYSGLKKRKLNKLKERFFQQNGGLLLQQKIEKHRGSIQTAKIFSIEELKKATNNFDEDKILGRGGHGIVYKGVLQDNTTVAIKKSKISDQCQIEQFINEVIILSQINHANVVKLLGCCLETQVPLLVYEFIQGGTLYDHLHAQNRSLKLDWKTRLRISSETAGVLAYLHSATSPPIIHRDVKTINILLDHNLRAKVADFGASKIVPLDQTQFTTLVQGTTIGYLDPEYFHTSHLTEKSDVYSFGVVLAELLTGRKALCFDMPEDDRNLAMYFISSMNKGGLLHILDNQITDEAKPEQVMEFSNIAKRCLNLKGEERPTMKEVATELEGLRMMENQRWESDRSCLNETENMLSASSSSLSSAFYSEDGSHGRGIISRLESIGQITVSLGGR 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271885g00007 453 CDD STKc_IRAK 124 392 - -
Stsc271885g00007 453 ProSiteProfiles Protein kinase domain profile. 118 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271885g00007 453 MobiDBLite consensus disorder prediction 1 28 - -
Stsc271885g00007 453 Gene3D Transferase(Phosphotransferase) domain 1 194 415 - -
Stsc271885g00007 453 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 41 397 IPR045274 GO:0007166
Stsc271885g00007 453 FunFam Wall-associated receptor kinase 2 194 412 - -
Stsc271885g00007 453 ProSitePatterns Protein kinases ATP-binding region signature. 124 147 IPR017441 GO:0005524
Stsc271885g00007 453 MobiDBLite consensus disorder prediction 9 23 - -
Stsc271885g00007 453 SMART serkin_6 118 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271885g00007 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Stsc271885g00007 453 FunFam Wall-associated receptor kinase 2 88 193 - -
Stsc271885g00007 453 Gene3D Phosphorylase Kinase; domain 1 89 193 - -
Stsc271885g00007 453 SUPERFAMILY Protein kinase-like (PK-like) 100 390 IPR011009 -
Stsc271885g00007 453 Pfam Protein tyrosine and serine/threonine kinase 121 389 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271885g00007 Stsc-Chr271885 33963 38053 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271885g00007 6 404 Receptor kinase-like Gene Family AT1G21230 51.244 4.91e-138 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc271885g00007 PK_Tyr_Ser-Thr 8.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271885g00007 - - ahf:112763858 674.47