Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271885g00006 ATGGCTGTGGAATACTCACCAAAGCTAATGCTTCCACTGCTACTAACACTTGTTGTTGTTGCAGGTCTCCATTATTGTGAAGCTGGCCGCAATAAATGCACACAAAGATGCGGGAAAGTCGACATTCCGTTCCCGTTTGGGACCACAATGGAGTGCTCCCTCGAACCCAAATTCCTCGTCAGATGCACCAACAACAATAGTGACCCAATCTTGCAAGACAATGACCGCCCTCTGAGAAGCATCTCCCTCGACCAAGGCTTACTCCGCGTTTCCTTGCCTGCAGCCAAAGACTGCTACACAGGCACGCTGAAGAAATTCAAAAATATTGAATCCATCGATTGGCTTTACGATTTTGGAAGTTATAGCATGTCATCGAGCCAAAACGAGTTCACTACTATTGGCTGCGACACACTGGGAATAGTGGTGGGGTATCCCTATTCAGATTCATTCTTTGATAAACCCTATGCCAAAACATGCTTATCCTACTGCGAGAAACCCGGTGATGCAACTACTGGAACCTGCGCTGGCACGGGTTGTTGCCATGTTGATGTACCAGGTTCCGAGTTCAAACAAGGCTTATCATTCATCTCTTATACTTTTGAAAATTCTCTACTCAACAACAGTGATAAGATTGAATTCAGTCCCTGTGGTTATGCCTTTGTGGCGGAGAAAGAATACTACAAATTTATGGCCGACGATCTGATAAGCAACAGGTTGAAGAACATTACAGTTCCCGTCGTGCTGGATTGGAGTGTAGGGAACCTTACATGTGAAGAAGCGAAGAAGAACAATTCCACCTATGCGTGTAAAGGGATGAACGTTGTCTGTTACCCTGCAAGGAACCGTCCTGGTTATCTTTGCAACTGCACAACTGGTTTTCAGGGTAACCCTTATCTCCCTCAAGGTTGTACAGATATTAATGAGTGCCTTGGAAGCCATGATTGCGTCAAGGGAACAAGATGCCACAACGACCCACCAGGGAACTACACATGCGAGTGTCCAAAGGGGTTGATAGGAGATGGAAGAAATAATGGAACAAAATGCCAAACTCCCAAACCCGCCACTCGGAACATACTCATAATTGCATTGATTGTCAGTTTAAGCATCTTAGCACTATTTGTGGTGGGCTCTAATGCCTATTGCGGATTGAAAAAAAGAAAGCTCAACAAACTAAAAGAACAGTTTTTTCAACAAAATGGTGGTCTACTGTTGCAACAAAAAATTGCCAAACATAGAGGTTCAATTCAAACAGCCAAAATCTTTAGCATAAAAGAGCTAAAGAAGGCCACCAACAACTTTGATGAAGACAAGATCTTAGGCCGGGGAGGTCAAGGAATAGTTTACAAAGGAGTCTTACAAGACGATACAATTGTGGCAATCAAGAAGTCCAAAATCAGTGATCAAAGACAGATTGAACAATTCATCAATGAAGTGATTATACTTTCCCAAATCAACCATACAAATGTGGTTAAACTCTTAGGGTGTTGCTTAGAGACACAAGTCCCGTTGCTTGTTTATGAATTCATTCAAGGTGGTACTCTTTATGATCATCTTCATGCTCAGCGCCAATCTCTAAGGCTTAATTGGAAAGCAAGATTGAGAATAGCAGCAGAGACTGCTGGTGCCTTGGCATACCTGCACTCTGCAACTTGTCCACCCATCATACATAGAGATGTGAAGACTACTAACATACTTCTTGATCATAATCTCAAGGCAAAGGTTTCTGATTTCGGAGCTTCAAAGATTGTTCCTCTTGATAATACTGAATTATCCACCTTGGTGAAAGGAACTCTGGGGTATCTTGATCCGGAATACTTCCACACAAGCTACTTAACAGAAAAGAGTGATGTTTATAGCTTTGGAGTCGTTCTAGCAGAGCTGCTAACGGGACGAAAAGCACTTTGTTTTGAGCTGCCTGAGAATGATAGAAACCTTGCAATGTATTTCGTTTCTTCAATGAATCATGGTCGTTTACATGACATTATGGACAAAGCCATAATTGAAGAGGCAAAGCCTGAGCAACTAATGGAATTTGCGAATATGTCAAAACGATGCTTAAGGGTGAAGGGAGAAGAAAGGCCTACCATGAAAGAAGTGGCAGCTGAACTTGAGGGACTCAGAATAATGGAAAAGAACATGTGGGAAAGTGTAAGATCGTCTTTGGAAGAGACTAAAATTTTGCTCAATGCATCATCATCATCATCTTCCTCCGCTTTTTACAGTGAAAGCATAGGTCAGATTACTGTTTCATTAGGTGGAAGGTGA 2265 0.4243 MAVEYSPKLMLPLLLTLVVVAGLHYCEAGRNKCTQRCGKVDIPFPFGTTMECSLEPKFLVRCTNNNSDPILQDNDRPLRSISLDQGLLRVSLPAAKDCYTGTLKKFKNIESIDWLYDFGSYSMSSSQNEFTTIGCDTLGIVVGYPYSDSFFDKPYAKTCLSYCEKPGDATTGTCAGTGCCHVDVPGSEFKQGLSFISYTFENSLLNNSDKIEFSPCGYAFVAEKEYYKFMADDLISNRLKNITVPVVLDWSVGNLTCEEAKKNNSTYACKGMNVVCYPARNRPGYLCNCTTGFQGNPYLPQGCTDINECLGSHDCVKGTRCHNDPPGNYTCECPKGLIGDGRNNGTKCQTPKPATRNILIIALIVSLSILALFVVGSNAYCGLKKRKLNKLKEQFFQQNGGLLLQQKIAKHRGSIQTAKIFSIKELKKATNNFDEDKILGRGGQGIVYKGVLQDDTIVAIKKSKISDQRQIEQFINEVIILSQINHTNVVKLLGCCLETQVPLLVYEFIQGGTLYDHLHAQRQSLRLNWKARLRIAAETAGALAYLHSATCPPIIHRDVKTTNILLDHNLKAKVSDFGASKIVPLDNTELSTLVKGTLGYLDPEYFHTSYLTEKSDVYSFGVVLAELLTGRKALCFELPENDRNLAMYFVSSMNHGRLHDIMDKAIIEEAKPEQLMEFANMSKRCLRVKGEERPTMKEVAAELEGLRIMEKNMWESVRSSLEETKILLNASSSSSSSAFYSESIGQITVSLGGR 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271885g00006 754 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 30 712 IPR045274 GO:0007166
Stsc271885g00006 754 Pfam Protein kinase domain 434 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271885g00006 754 ProSiteProfiles EGF-like domain profile. 305 349 IPR000742 -
Stsc271885g00006 754 SMART egfca_6 305 349 IPR001881 GO:0005509
Stsc271885g00006 754 CDD EGF_CA 305 340 - -
Stsc271885g00006 754 CDD STKc_IRAK 439 706 - -
Stsc271885g00006 754 Pfam Wall-associated receptor kinase galacturonan-binding 33 90 IPR025287 GO:0030247
Stsc271885g00006 754 ProSitePatterns Serine/Threonine protein kinases active-site signature. 554 566 IPR008271 GO:0004672|GO:0006468
Stsc271885g00006 754 SUPERFAMILY EGF/Laminin 303 349 - -
Stsc271885g00006 754 FunFam Fibrillin 2 300 345 - -
Stsc271885g00006 754 Gene3D Transferase(Phosphotransferase) domain 1 509 728 - -
Stsc271885g00006 754 SUPERFAMILY Protein kinase-like (PK-like) 417 711 IPR011009 -
Stsc271885g00006 754 FunFam Wall-associated receptor kinase 2 509 726 - -
Stsc271885g00006 754 ProSiteProfiles Protein kinase domain profile. 433 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271885g00006 754 SMART serkin_6 433 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271885g00006 754 Gene3D Phosphorylase Kinase; domain 1 407 508 - -
Stsc271885g00006 754 Gene3D Laminin 256 348 - -
Stsc271885g00006 754 SMART egf_5 256 304 IPR000742 -
Stsc271885g00006 754 SMART egf_5 308 349 IPR000742 -
Stsc271885g00006 754 FunFam Wall-associated receptor kinase 2 403 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271885g00006 Stsc-Chr271885 26511 32057 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271885g00006 19 749 Receptor kinase-like Gene Family AT1G21250 43.658 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc271885g00006 Pkinase 2.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271885g00006 - - ahf:112763858 975.311