Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271884g00017 ATGGGAACTCGACCGGAACAACCGTGTCGTGAGGAAGATGATGAGGAGATGCTGGGTCCTGGAGCAACGATTTCGAGTCAGTCGATGTCAACTAGCAGGAGTGTGGGATCACCGTCTAGCCGGAGTGAGCAGACAATGGCAACACCTGCTAGTGATAGCACTTTTCTCAGATTAAACCATCTTGACATTCACGGTGACGATGCTGGATCGCAGGGAGCAGTGGCTAGCAAGAAGAAAAAAAGAGGTCAACGTGCTGTAGGAGGTGATAAGAGTGGAAGAGGGCTCCGCCAGTTTAGCATGAAAGATGAGCTTGTTGCTGAATTTGCTGACCCAGGCAGCAGTGTTTTAGCCCCTGATCAGCAACAATATGATGAGAAAAATATTCGTCGAAGGGTCTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACTAGCCAGAGTGATATTGAAGAACTAAAGACAGAACGTCTTGGGCTGAGGAATAGAATTGAAAAGAAAGCCGCTTACTTGCAAGAGCTGGAAGAGCAATATGTAGGTCTTCAGAACCTCATAAAACGGAATGAGCAATTATGTAGCTCAGGAAATGCTCCCAGTGGAGGTGTATCTTTGCCTTTTATTCTAGTGCAGACACGTCCACATGCAACTGTTGAGGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAACAGTACTCCTTTTGAGCTGCATGATGACAACTATGTTCTCAAGGCAATGAAATTTTGTGAGAGGCCTCAGAACGATAATAATGTAGCACCGAATATTACAGATGGAGGTGAAGGTTCTAGCATGTCAGGGTTGTTTCATGCGCAGGCTCCCGCTGCAGCCTCAAACCCACCTGTTAGACCTCCTTCGTCACCACCACTTCCTGGAATATTAAAGGCCAGAGTTAAGCCTGAGCACTAA 981 0.4526 MGTRPEQPCREEDDEEMLGPGATISSQSMSTSRSVGSPSSRSEQTMATPASDSTFLRLNHLDIHGDDAGSQGAVASKKKKRGQRAVGGDKSGRGLRQFSMKDELVAEFADPGSSVLAPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSQSDIEELKTERLGLRNRIEKKAAYLQELEEQYVGLQNLIKRNEQLCSSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQNDNNVAPNITDGGEGSSMSGLFHAQAPAAASNPPVRPPSSPPLPGILKARVKPEH 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271884g00017 326 PIRSF Txn_factor_DP 6 101 IPR015648 GO:0005667|GO:0051726
Stsc271884g00017 326 PIRSF Txn_factor_DP 102 326 IPR015648 GO:0005667|GO:0051726
Stsc271884g00017 326 SUPERFAMILY "Winged helix" DNA-binding domain 102 157 IPR036390 -
Stsc271884g00017 326 MobiDBLite consensus disorder prediction 1 17 - -
Stsc271884g00017 326 FunFam Transcription factor-like protein DPB 162 287 - -
Stsc271884g00017 326 SMART DP_2 163 324 IPR014889 -
Stsc271884g00017 326 Gene3D Transcription factor DP 162 282 IPR038168 -
Stsc271884g00017 326 SUPERFAMILY E2F-DP heterodimerization region 163 280 IPR037241 -
Stsc271884g00017 326 SMART E2F_TDP_2 90 156 IPR003316 GO:0005667|GO:0006355
Stsc271884g00017 326 CDD DP_DD 161 264 IPR014889 -
Stsc271884g00017 326 Pfam E2F/DP family winged-helix DNA-binding domain 117 156 IPR003316 GO:0005667|GO:0006355
Stsc271884g00017 326 Gene3D - 86 161 IPR036388 -
Stsc271884g00017 326 MobiDBLite consensus disorder prediction 272 286 - -
Stsc271884g00017 326 PANTHER TRANSCRIPTION FACTOR DP 22 279 IPR015648 GO:0005667|GO:0051726
Stsc271884g00017 326 Pfam Transcription factor DP 164 276 IPR014889 -
Stsc271884g00017 326 MobiDBLite consensus disorder prediction 21 55 - -
Stsc271884g00017 326 MobiDBLite consensus disorder prediction 1 94 - -
Stsc271884g00017 326 Coils Coil 172 206 - -
Stsc271884g00017 326 MobiDBLite consensus disorder prediction 272 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271884g00017 Stsc-Chr271884 148899 151937 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271884g00017 91 276 E2F-DP Transcription Factor Family AT5G02470 50.000 1.88e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Stsc271884g00017 DP 2.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271884g00017 K04683 - qsa:O6P43_019777 513.842