Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271884g00008 ATGAAGAAGAGTTTGTTCAGCCTTGTGAAGAAGCTCTTCATAAGAGACTCAAATTCAACACAGGATAAGAACAAGGAGAAGAGAAGGAGATGGGTATTTGGAAGGGTAAAGAAGAAGAGGTTGCCTTCAATTGCAGCCCCACCACCAACAACAACAAAGGCAACACATCTGAGTGAAGCAGAGGAAGAAGAGAGCAAGAAACATGCTTTAACAGTGGCCATTGCTTCAGCTGCTGCTGCTGCTGAGGTTGTAAGGCTCTCTGGGGTCCCACAATCTTCTCACAAACCTAATCAGAATTCAGAAGAATCTGATGAAACTAGGAATGTTGCTTCTCCTTACACAAACCAGTGCCAGAGGAATGAGATCAGAGAATTTGCAGCCATCAAAATTCAAACTGCATTTAGGGGTTACTTGGCTAAGAAGGCTTTGAGAGCTTTAAAGGGAATAGTGAAGCTTCAAGCCCTAATTCGCGGCCGAGCAGTAAGGCGCCAAGCCATGAGTACTTTAAAGTGCTTGCAATCCATTGTGAGTATCCAGTCACAGGTTTGTGCAAGGAGACTCAAAATGGTTGAAGGAAGCTGGGATTATTGTACTGAAAATGAAGAGATGCATGATTTAAAAGACAAGATAATAAGGATGGATTCAAACAGTGAAAGAAAGTGGAATGACAGCACCTTATTGAAGGAAGAGGTGGATGCCTCTTGCATAATCAAGAAAGAAGCCGTTCATAAGAGAGAGAGAATAAAAGACTACTCATTTAATCACAGAAGGTCAGCAGAATCAGAAAGAAGTAAAGTGCATGGAAGATGGAGGTACTGGCTGGAACAATGGGTGGATACACAGCTTTCAAAGAGCAAAGAGCTTGAAGATTTAGACTCGGTTTTCAGCTCAAATTCAAGAAGTGGTGAAGAATATGGAGGAAGACAGCAACTTAAGCTGAGAAACATTATGCATAGACAACAAAGTCCAGTTGAAGGTTTGGATTCTCCAATAGTTTTTCCAAGAAAAGCTTTTACTCATAGGAGGCAGTGTTCAGTGGGAGAAGACCACTCATTCTCAAGCTCTTCTCCGGCGACTCCGGCGTACATGGCTGCAACAGAATCAGCAAGAGCAAAAGCAAGATCAACAAGCTCCCCAAGAGCAAGGACAGGTAATTTGGACAGTGATAGTAGCTATTCACCATGCAAGAAGAAGCTATCTATTGTCTCTAATGTTAACAGTGAAGTGCTTAANNNNNNNNNNGTAATCAACAAAGGTCACCAAGCCTTAAGGGACTTTCAGTGCCTATAA 1290 0.4202 MKKSLFSLVKKLFIRDSNSTQDKNKEKRRRWVFGRVKKKRLPSIAAPPPTTTKATHLSEAEEEESKKHALTVAIASAAAAAEVVRLSGVPQSSHKPNQNSEESDETRNVASPYTNQCQRNEIREFAAIKIQTAFRGYLAKKALRALKGIVKLQALIRGRAVRRQAMSTLKCLQSIVSIQSQVCARRLKMVEGSWDYCTENEEMHDLKDKIIRMDSNSERKWNDSTLLKEEVDASCIIKKEAVHKRERIKDYSFNHRRSAESERSKVHGRWRYWLEQWVDTQLSKSKELEDLDSVFSSNSRSGEEYGGRQQLKLRNIMHRQQSPVEGLDSPIVFPRKAFTHRRQCSVGEDHSFSSSSPATPAYMAATESARAKARSTSSPRARTGNLDSDSSYSPCKKKLSIVSNVNSEVLXXXXVINKGHQALRDFQCL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271884g00008 429 MobiDBLite consensus disorder prediction 371 390 - -
Stsc271884g00008 429 MobiDBLite consensus disorder prediction 20 63 - -
Stsc271884g00008 429 PANTHER IQ-DOMAIN 5-RELATED 17 400 - -
Stsc271884g00008 429 MobiDBLite consensus disorder prediction 90 112 - -
Stsc271884g00008 429 Pfam Protein of unknown function (DUF4005) 349 407 IPR025064 -
Stsc271884g00008 429 Gene3D - 121 173 - -
Stsc271884g00008 429 ProSiteProfiles IQ motif profile. 123 151 IPR000048 GO:0005515
Stsc271884g00008 429 ProSiteProfiles IQ motif profile. 147 174 IPR000048 GO:0005515
Stsc271884g00008 429 FunFam IQ-domain 11 122 173 - -
Stsc271884g00008 429 MobiDBLite consensus disorder prediction 86 112 - -
Stsc271884g00008 429 Pfam IQ calmodulin-binding motif 126 144 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271884g00008 Stsc-Chr271884 52683 55039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271884g00008 2 419 IQD Protein Family AT5G13460 45.498 2.83e-105 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271884g00008 - - ahf:112789375 669.077