Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271884g00003 ATGGATTCAGGGTCACCGTACCAATGGATAAGGGAGCTGAGATTAGAAGACAGCAACACCTTAAATCCATTTGATCTTCTTTATGAATGTGCCAAGTTTGTTGCATCAGGAAGCATCAAGAATGCAGACATAGCACTTGAATACATCTCTCACCAGCTGTCTCCGGACGGCGCGGCCGCGCAGCGCACCGTCACTTATTTCAGCGAAGCTCTTGCTTCCAAGATAGTCAAAAATCTTCCAGGAGTAGACAAAGCTCTTAACTCCTCAAAGAGATTGACTGCCTCTGAAGAAATCCTTGTCCAGAACTACTTCTATGAGTTGTTTCCATTTCTGAAATGTGCTTACTTGACTGCGAATCAAGTCATTGTTAAAGCCATGGAAGGTGAAAGAGTTGTTCATATCATTGATCTGCATTGTGCTGAGCCGGTTCAGTGGATTAACCTCTTGATGACATTGAATGATCGTCCTGAAGGACCTCCTCATTTGAGAATCACAAGCATTCATGATAAGAAAGAGGTTTTAGATCAGATGAATTCTAGTTTGACAAGAGAAGCAGAGAAATTGGATTTCCCTTTGCAGTTCAATCCTATTGTTAGCACTTTAGAAGATCTTGATATCGATAGCTTGCCGGTTCGGACCGGCGAGGCGCTTGCAATTTGTTCTGTTTTGCAGCTGCATCGCCTTCTGGCAACGGATGATGAAGTTCTAGGGAGGAATTCTCCGGCTGCGTCGATGAATCTGCATAGAGCAGTGCATATGAACCGGAGAACTTTCGCAGAATGGCTCGAAAGAGACATGATGAATTCATACATTTCGAGTCCTAACTCTGCTTTGTCACCTCCTCCTCTGTATCCTTCTCCTAAGATGGAGGCATTCTTAAGAGATATTCGCAAATTGCAGCCGAAATTAATGGTGGTTACTGAACAAGAGACTAATCTTAATGGATGTAGTCTTGTGGAGAGGGTTGAGAAGGCCTTGTACTTCTACAGCGCCTTGTTCGATTGCTTGGATTCAACCGTGCGAAGAACTTCCTTGGAGAGGAAGAAAGTTGAGAGTTTGCTGCTTGGAGAGCAGATAAAGAACATCATTGCATCTGAAGGGTTTGAGAGGAAGGAGAGGTATGAGAAGCTCGAGAATTGGATTCGGCGACTTGATATGGCCGGATTCGTGAGGCTGCCGTTGAGGGACAATGATAAGTTGCATGCTAAGGAGGTTCTGCATAACTATGGTCACAAATATATGATTAGAGAAGGGCATGGTTGCTTACTTGTTTGTTGGGGTGATAGACCCCTTTTCTCCATTTCAGCTTGGAGTTTTAGAGGATTGAACCTTTCTTTATAA 1341 0.4385 MDSGSPYQWIRELRLEDSNTLNPFDLLYECAKFVASGSIKNADIALEYISHQLSPDGAAAQRTVTYFSEALASKIVKNLPGVDKALNSSKRLTASEEILVQNYFYELFPFLKCAYLTANQVIVKAMEGERVVHIIDLHCAEPVQWINLLMTLNDRPEGPPHLRITSIHDKKEVLDQMNSSLTREAEKLDFPLQFNPIVSTLEDLDIDSLPVRTGEALAICSVLQLHRLLATDDEVLGRNSPAASMNLHRAVHMNRRTFAEWLERDMMNSYISSPNSALSPPPLYPSPKMEAFLRDIRKLQPKLMVVTEQETNLNGCSLVERVEKALYFYSALFDCLDSTVRRTSLERKKVESLLLGEQIKNIIASEGFERKERYEKLENWIRRLDMAGFVRLPLRDNDKLHAKEVLHNYGHKYMIREGHGCLLVCWGDRPLFSISAWSFRGLNLSL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271884g00003 446 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 21 433 IPR005202 -
Stsc271884g00003 446 Pfam GRAS domain family 25 437 IPR005202 -
Stsc271884g00003 446 ProSiteProfiles GRAS family profile. 14 438 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271884g00003 Stsc-Chr271884 23381 25228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271884g00003 1 440 GRAS Transcription Factor Family AT1G50420 49.778 4.57e-148 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc271884g00003 GRAS 1.8e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271884g00003 - - gmx:100779726 590.497