Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271884g00001 ATGCTCCTCAAGAATCTTCTAGAGAGTTGTGCTAAGTACATTGAATCTGGCAACATCCCAGATGCAGATTCAGGATTAGCAAGAATCTCCCACCTTGCTTCCTCAGAAGGTGATCCATTTCAGAGGCTATCAACTTTTCTCAGTGAAGGACTCACATGCCAACTCCTCAATCGATCAAACCTTCATGGAGCTCGTGATGTTCTATCAAAACCAGTCTCAGCTTTCGAACACTCTCTTGCTAAGACTTTCTCTTTTGAACTCTTTCCCTTTCAAAGGTTCTTTTATGCGGTTACAAATCAGGAGATTATTGATGCCATGATAGGGCTTCAAGGTATTCATATTCTTGATCTTAGTGAGCCATATGATTCTACTCAATGGATACTCTTTATGCAGAGTTTGAAACAACAGCGATCTTCTTCTTCTTCTTCATCAACTAGGCCACAACAGCAACTACCGTATTTGAAGATCACTTGTGTTCATACTAATCAGGATGTGTTAGACCAAATGAGATTGCATTTGACATTAGAAGCTGGCAGATTGAATTTCCAATTCCAATTCCATGAGATTGTGAGTGCAT 577 0.4003 MLLKNLLESCAKYIESGNIPDADSGLARISHLASSEGDPFQRLSTFLSEGLTCQLLNRSNLHGARDVLSKPVSAFEHSLAKTFSFELFPFQRFFYAVTNQEIIDAMIGLQGIHILDLSEPYDSTQWILFMQSLKQQRSSSSSSSTRPQQQLPYLKITCVHTNQDVLDQMRLHLTLEAGRLNFQFQFHEIVSA 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271884g00001 192 ProSiteProfiles GRAS family profile. 1 192 IPR005202 -
Stsc271884g00001 192 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 190 IPR005202 -
Stsc271884g00001 192 Pfam GRAS domain family 3 190 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271884g00001 Stsc-Chr271884 1037 1613 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271884g00001 1 191 GRAS Transcription Factor Family AT1G50420 33.333 3.53e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc271884g00001 GRAS 1.5e-29 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271884g00001 - - ahf:112772597 251.906