Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc271882g00039 | ATGGCATTCAGCGGGACACAACAGAAATGCAAGGCCTGTGACAAAGTTGTTCACTTCGTTGAATCTCAATCTGCAGATGGCACCATTTATCACAAGAACTGCTTCAGATGCAGTCACTGCAATGGCCGTCTCGTGATAAGCAACTACTCATCTATTGAGGGAGTTTTATACTGCAAGCCACACTTTGAGCAGCTCTTCAAGGAAAATGGTGCTACCTTGATGAAGAGATCCCTATCATCTGGGAAGCAGCAACAGGGTGATGCGCCCAAGAAACAACCAAGTAGGCTGGCCTCGTTCTTCTCTGGCACTCAGGATAAATGTTCAGTTTGTAAGAAAACTGTGTATCCATTAGAAAAGTTGACGGTGGAAGGAGAGTTTTACCACAAATCATGCTTTAAGTGCACACATGGAGGGTGCTCGCTGAACCCATCATCGTATGCAGCATTGGATGGATACCTTTACTGCAAGCCCCATTTCTCTCAGCTCTTCAAGGAGAAAGGAAGCTACAACCATCTCTCCAAGACAGCTTCCATGAGGAAGAATGGACAGCAACAAGATGACAAACCAGCCGACGCAACCGAAGACACAGACCCGGCCGCCGCACCACCAGCAGAGCCAGCAGAAGAGGCAGCACCAGCAGCTGAACCTGCTGAGGATGCTCCTGTTACACCGCAAGATTAG | 681 | 0.4846 | MAFSGTQQKCKACDKVVHFVESQSADGTIYHKNCFRCSHCNGRLVISNYSSIEGVLYCKPHFEQLFKENGATLMKRSLSSGKQQQGDAPKKQPSRLASFFSGTQDKCSVCKKTVYPLEKLTVEGEFYHKSCFKCTHGGCSLNPSSYAALDGYLYCKPHFSQLFKEKGSYNHLSKTASMRKNGQQQDDKPADATEDTDPAAAPPAEPAEEAAPAAEPAEDAPVTPQD | 226 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc271882g00039 | 226 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 133 | 172 | - | - | |
| Stsc271882g00039 | 226 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Stsc271882g00039 | 226 | SMART | lim_4 | 106 | 158 | IPR001781 | - | |
| Stsc271882g00039 | 226 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Stsc271882g00039 | 226 | Gene3D | Cysteine Rich Protein | 4 | 72 | - | - | |
| Stsc271882g00039 | 226 | Gene3D | Cysteine Rich Protein | 101 | 171 | - | - | |
| Stsc271882g00039 | 226 | MobiDBLite | consensus disorder prediction | 176 | 226 | - | - | |
| Stsc271882g00039 | 226 | Pfam | LIM domain | 107 | 162 | IPR001781 | - | |
| Stsc271882g00039 | 226 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Stsc271882g00039 | 226 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Stsc271882g00039 | 226 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 99 | 132 | - | - | |
| Stsc271882g00039 | 226 | PANTHER | OS06G0237300 PROTEIN | 99 | 206 | - | - | |
| Stsc271882g00039 | 226 | ProSiteProfiles | LIM domain profile. | 105 | 165 | IPR001781 | - | |
| Stsc271882g00039 | 226 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Stsc271882g00039 | 226 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 71 | - | - | |
| Stsc271882g00039 | 226 | FunFam | LIM domain and actin-binding 1 | 4 | 73 | - | - | |
| Stsc271882g00039 | 226 | FunFam | LIM domain and actin-binding 1 | 101 | 171 | - | - | |
| Stsc271882g00039 | 226 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc271882g00039 | Stsc-Chr271882 | 211397 | 212828 | Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Stsc271882g00039 | LIM | 6.6e-11 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc271882g00039 | - | K24413 | gmx:100499865 | 298.516 |