LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc271882g00034	ATGTGGCGGTCGGCGATTTCAGAACGGCGGAGGGCATTCTCGAAGCTTCTATTCACCTTCACAGTGTCCCGTAACATGGGTGGCGGCCCCCGCACCTTCCCCGGCGGCGTCAACAAGTGGAAATGGAAGCGCATGCACGAGAAGCGCGCACGTGATAAAGAGAAGAGACTTCTCGAACATGAGAAACAGCTCTATGAAGCTCGCATTCGCTCCCAAATACGCTCCCACCTCGCACCCGATAACTCACCCGCCACCGCCGCCGCCACCCACGGCCCTATCTCTCCCACCGACCACATTAGGGCCCTCGCTAACCGCTTCATGAAGGAAGGAGCTGAAGATCTCTGGAACGAAGACGATGGTCCTCTAAGTGCTTCTTCTTCTTCTTCTGCCATGCGGCGGCAAGGTTCAATTGAGGCGCCGGTGGATTTGCGGAAGCTGATAGCAGAGAAACCGAATCCTAATTCAATGAATTCGAGTGGGAATTTCGGTCAGAGGAGGGGTTACCGTTCTGTTCCTGAGGTGAACTCCGGTGTTAGTAGCAGTAAGAAACTTGCGCCTGCTGGAAGGAGGAGATTTTGGAGGAATGATAGTTCTTCTTCGAGTTCGGATTCGAGTGAATCCGAAGATGAGAACGATTCTAGGGTTAATAATTGGGATGTTAGGAAGATGGGTAGCAGTGCTTCTTTGGGGAAGCATGATTTGAAGAGGGAGAGGAGAGTGATGCCAAAACCATATGATGAAGGGGCTGATTTTGCAGAACAAGTTGAGTTGATTAAGTATGAGATTAACAAGAGGAAGTTGAAACAGAAGGAAATGGAAGAGTACAGAGTTCAGGACCAAGAATCCATCCTAACCCAATCAAGATTTGATGAGTGCGGTATGTCGCCATTGACAGTCAAGGCTCTTTCTTCAGTTGGTTATATCCACATGACCCGGGTGCAAGAGGCAAGCCTTTCAGTTTGCCTTGAGGGTAAGGATGCTCTAGTCAAAGCTAAAACCGGCACGGGAAAAAGTGCAGCATTTTTGCTTCCTGCTATTGAAGCAGTTTTGAAAGCTATGGGTAGCAAGTCGCGTCACCATGTGCCACCTATATTTGTTCTTATACTCTGTCCTACCAGAGAACTTGCCAGTCAAATTGCTGCTGAAGCAAAGGCTTTGCTCAAGCATCATGATGGCATTGGTGTACAAACTCTTGTAGGAGGTGTGCGATTTAAAGTGGACCAAAAGCATCTTGAATCCGATCCATGCCAGATACTTGTTGCTACCCCTGGTAGGTTGCTAGACCATATTGAGAATAAGTCTGGAATATCTGTGCGATTGATGGGCTTGCAGATGCTTGTACTTGATGAAGCTGATCATTTACTAGATCTTGGATTCCGAAAGGATGTAGAAAAGATTCTTGACTGTTTGCCTCGTCAAAGGCAATCCTTGATGTTTTCTGCGACCATCCCAAAGGAGGTCCGCCGAGTATCTCAGCTTGTTTTGAAAAGGGAACATTCATATATTGATACAGTTGGTATGGGTTGTCTGGAAACTCCAGCGAAGGTCAAGCAATATTTCCTTATTGCCCCACAGGAATCTCATTTTCAAATAGTACACCATATTTTGAAGGAGCATGTTATGCAAACACCAGATTATAAGGTTATTGTTTTCTGTGTTGCTGGAATGGTAACATCACTTATGTATCAACTACTCCGTGAAATGAAAATGAATGTCAGGGAGCTACACTCTCGAAAACCCCAACTGTATCGAACTCGCATATCAGATGAGTTTCGGGAATCCAAACAACTCATTCTTGTCTCATCTGATGTTTCATCTCGCGGAATGAACTATCCCGATGTTACTTTAGTCATACAGGTGGGTATTCCTCCTGATCGTGAACAATATATACATCGTCTAGGAAGAACTGGACGGGAAGGCAAAGAAGGGGAAGGGATATTGTTGATTGCTCCATGGGAACAATATTTTTTAGATGAAATCAAGGATCTTCCTCTAGAGAAATTCCCTTTGCCAGATATACATACAGAGACAAAGCTTAAGATAGAACATTCCATGGCAAAGATTGATAGTGACGTCAAAGAAGCCGCATATCATGCTTGGCTGGGATATTACAACTCAATTAGGGAAATTGGGAGGGAGAAGTCCAGCATAGCTGAGCTCGCCAACCGATTTTCTGAATCAATTGGTTTACAAAGGCCTCCTGCCCTCTTTCGAAAAACCGCTCTAAAGATGGGTTTGAAAGACATTCCCGGCATTAGGATTCGTAGATAA	2271	0.4566	MWRSAISERRRAFSKLLFTFTVSRNMGGGPRTFPGGVNKWKWKRMHEKRARDKEKRLLEHEKQLYEARIRSQIRSHLAPDNSPATAAATHGPISPTDHIRALANRFMKEGAEDLWNEDDGPLSASSSSSAMRRQGSIEAPVDLRKLIAEKPNPNSMNSSGNFGQRRGYRSVPEVNSGVSSSKKLAPAGRRRFWRNDSSSSSSDSSESEDENDSRVNNWDVRKMGSSASLGKHDLKRERRVMPKPYDEGADFAEQVELIKYEINKRKLKQKEMEEYRVQDQESILTQSRFDECGMSPLTVKALSSVGYIHMTRVQEASLSVCLEGKDALVKAKTGTGKSAAFLLPAIEAVLKAMGSKSRHHVPPIFVLILCPTRELASQIAAEAKALLKHHDGIGVQTLVGGVRFKVDQKHLESDPCQILVATPGRLLDHIENKSGISVRLMGLQMLVLDEADHLLDLGFRKDVEKILDCLPRQRQSLMFSATIPKEVRRVSQLVLKREHSYIDTVGMGCLETPAKVKQYFLIAPQESHFQIVHHILKEHVMQTPDYKVIVFCVAGMVTSLMYQLLREMKMNVRELHSRKPQLYRTRISDEFRESKQLILVSSDVSSRGMNYPDVTLVIQVGIPPDREQYIHRLGRTGREGKEGEGILLIAPWEQYFLDEIKDLPLEKFPLPDIHTETKLKIEHSMAKIDSDVKEAAYHAWLGYYNSIREIGREKSSIAELANRFSESIGLQRPPALFRKTALKMGLKDIPGIRIRR	756

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc271882g00034	756	Gene3D	-	511	735	IPR027417	-
	Stsc271882g00034	756	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	535	681	IPR001650	-
	Stsc271882g00034	756	SMART	ultradead3	306	519	IPR014001	-
	Stsc271882g00034	756	PANTHER	RNA HELICASE	238	685	-	-
	Stsc271882g00034	756	MobiDBLite	consensus disorder prediction	226	240	-	-
	Stsc271882g00034	756	MobiDBLite	consensus disorder prediction	77	96	-	-
	Stsc271882g00034	756	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	287	315	IPR014014	GO:0003724
	Stsc271882g00034	756	Pfam	DEAD/DEAH box helicase	311	489	IPR011545	GO:0003676\|GO:0005524
	Stsc271882g00034	756	Gene3D	-	254	502	IPR027417	-
	Stsc271882g00034	756	MobiDBLite	consensus disorder prediction	113	240	-	-
	Stsc271882g00034	756	CDD	SF2_C_DEAD	516	649	-	-
	Stsc271882g00034	756	MobiDBLite	consensus disorder prediction	120	134	-	-
	Stsc271882g00034	756	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	318	501	IPR014001	-
	Stsc271882g00034	756	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	364	657	IPR027417	-
	Stsc271882g00034	756	Coils	Coil	43	63	-	-
	Stsc271882g00034	756	MobiDBLite	consensus disorder prediction	151	165	-	-
	Stsc271882g00034	756	SMART	helicmild6	559	640	IPR001650	-
	Stsc271882g00034	756	Pfam	Helicase conserved C-terminal domain	535	639	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc271882g00034	Stsc-Chr271882	187663	191486	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc271882g00034	287	665	Eukaryotic Initiation Factors Gene Family	AT3G19760	26.768	2.10e-42	157

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc271882g00034	-		-	pcin:129284459	1053.51