Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271882g00030 ATGCGTCTCCTCATGTGCCAAAGTGATCAAAATAGTATAACCGGCAACACCAACGATAATAATGTTGGAGGTCACGCTTCCGGTGCCATAAGAACCATGAAGGGTAATAATAACGATGAAAGCAACAAGGGCAAAGGAAAAGCTATCCCATCAGGATTCGAATTCAACGGTGGTTCTACTGAAGAGAGTACCACCACGGTGATGGATCCATCTGGTCGAGGAAAAAAGAGGGCTACTGATAATAATAAGAAGGAGAAGGAGAAGAAGAGTATGGAAATCAGGAAAGGGAAAGAAAAAATTGTTTCTGACACAGATTCTGATTCCGAATCTGAATCTGAGGACGATCCAAACGATGACACGTGTCTTTTGTGTGCAAATAGGAAAGAAGGCACACTCATTTGTTGTGATGGCTGCCCTTCTTCTTTCCATCTAACTTGCTTGAAATTACGTGAGCGAGGTTCCATCTGGTGA 471 0.4289 MRLLMCQSDQNSITGNTNDNNVGGHASGAIRTMKGNNNDESNKGKGKAIPSGFEFNGGSTEESTTTVMDPSGRGKKRATDNNKKEKEKKSMEIRKGKEKIVSDTDSDSESESEDDPNDDTCLLCANRKEGTLICCDGCPSSFHLTCLKLRERGSIW 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271882g00030 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 154 IPR013083 -
Stsc271882g00030 156 PANTHER PHD FINGER FAMILY PROTEIN 54 149 - -
Stsc271882g00030 156 SUPERFAMILY FYVE/PHD zinc finger 99 149 IPR011011 -
Stsc271882g00030 156 MobiDBLite consensus disorder prediction 1 119 - -
Stsc271882g00030 156 MobiDBLite consensus disorder prediction 1 44 - -
Stsc271882g00030 156 MobiDBLite consensus disorder prediction 56 70 - -
Stsc271882g00030 156 MobiDBLite consensus disorder prediction 73 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271882g00030 Stsc-Chr271882 174423 174991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271882g00030 114 150 PHD Transcription Factor Family AT4G14920 59.459 9.92e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271882g00030 - - aip:110263090 96.6709