Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271882g00019 ATGGATTGGAATTTGAAAGCACCACCGTCTTGGGATTTGACAGAAGTGGATGAGGCAACCTTACCAAACATAGAAACAGTGGACGGCTCAACCAGATTTGGTGTCTACAGAACAAAAGAAGGGGAATTCTCTGTTGACTTGAAACTTGGCCAAGTTGAGAATTCTGGCACAGAAACAGCCTTGGTGACTACAAATAAGTCCAACAAAGATGCTGTTGCTGCTGGTGTTGGTGTTGGTGTTGGGGTGTCCAACTCCAAAATGGTAATGGCATCATCATCACCTTCCTCCGGGTCATCAAAGAGAGCTAGAGCCATAAACAATGGGACACAAACAGTGTCATGCCTCGTTGATGGGTGCAATTCAGATCTCAGTACTTGCAGAGACTATCACAGGCGCCATAAGGTCTGTGAACTCCATTCCAAGACTGCTCAGGTCACAATTGCTGGCCACAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTTCATTCACTGGAGGAGTTTGATGAAGGGAAAAGAAGCTGCAGAAAACGCTTAGATGGACACAACCGAAGGAGGAGAAAGCCACAACCAGAACCAATCACAAGAGGTGGTAGTTTTTTGTCCAGTTTCCAAGGCAGTCAGTCGGTACCCTTCTCAGGTTCCCATGTGTTCCCCTCATCTGGTGTGTTGAATGCTGGATGGAGTGCAGGATTTGTTGCATCCTGCGGAGATGTCAGGCTCCACAGCCACAGCAGGCAGCAACAGCAACAGCAACAGCAACAGATGCACATGGTTGATAAACAGGACCTGTTCCTTGGATCCTCACCAACAACCTACAATAACAACAAAGAAGGGAAGCAACAACTTGCATTCTTACAAGCTGATAACCATCACCAAAATCCACATAACCACCACCACCACCATCATCATCATCATCATCATCATCTTCCAGCTGCTGGTGCTGCTTCTTCCATGTGCCTGAGGAACATGTTCTGTGATAACACCCTAACAAGCTCGGTCCACGACTCTTCTTGTGCTCTCTCTCTTCTGTCATCACCACAGACAACACACAATCCCGGGAATGGATTGAACCAATTGGTGCCGCAGCCTCACCCTCCTCACACTCATCATTCCTCCCTGATGCAACAATCCTTAGGCCTCAGCCTCCACGATAGCAGCAGCATGGAGTCGGTGGACCCGGTTATGGGCCACGGGGAGACTGAACATTGTTCTTCAATGTATAATATGGATTCTCATGGATCCCAGGGGAGTGATCCCCCACAACTATTCCCCTTCCAGTGGGAATAA 1287 0.4817 MDWNLKAPPSWDLTEVDEATLPNIETVDGSTRFGVYRTKEGEFSVDLKLGQVENSGTETALVTTNKSNKDAVAAGVGVGVGVSNSKMVMASSSPSSGSSKRARAINNGTQTVSCLVDGCNSDLSTCRDYHRRHKVCELHSKTAQVTIAGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPITRGGSFLSSFQGSQSVPFSGSHVFPSSGVLNAGWSAGFVASCGDVRLHSHSRQQQQQQQQQMHMVDKQDLFLGSSPTTYNNNKEGKQQLAFLQADNHHQNPHNHHHHHHHHHHHHLPAAGAASSMCLRNMFCDNTLTSSVHDSSCALSLLSSPQTTHNPGNGLNQLVPQPHPPHTHHSSLMQQSLGLSLHDSSSMESVDPVMGHGETEHCSSMYNMDSHGSQGSDPPQLFPFQWE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271882g00019 428 FunFam Squamosa promoter-binding-like protein 14 105 175 - -
Stsc271882g00019 428 Gene3D - 105 175 IPR036893 GO:0003677|GO:0005634
Stsc271882g00019 428 MobiDBLite consensus disorder prediction 364 388 - -
Stsc271882g00019 428 MobiDBLite consensus disorder prediction 404 421 - -
Stsc271882g00019 428 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 68 412 IPR044817 GO:0003677
Stsc271882g00019 428 MobiDBLite consensus disorder prediction 178 200 - -
Stsc271882g00019 428 ProSiteProfiles Zinc finger SBP-type profile. 111 188 IPR004333 GO:0003677
Stsc271882g00019 428 Pfam SBP domain 114 187 IPR004333 GO:0003677
Stsc271882g00019 428 SUPERFAMILY SBT domain 112 193 IPR036893 GO:0003677|GO:0005634
Stsc271882g00019 428 MobiDBLite consensus disorder prediction 290 310 - -
Stsc271882g00019 428 MobiDBLite consensus disorder prediction 293 310 - -
Stsc271882g00019 428 MobiDBLite consensus disorder prediction 347 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271882g00019 Stsc-Chr271882 102208 110222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271882g00019 1 428 SBP-box Gene Family AT5G50670 39.080 1.13e-69 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc271882g00019 SBP 5.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271882g00019 - - ahf:112790946 698.738