Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271881g00008 ATGGCTCCCAAATCCAAAGCCAATACTCCGAAACCCTCCCCCGACGCCCCATCCTCACCATCTTCCATCTTCAAACCTGGCACCAGGGTTGAGGTCAGCTCCGACGACGACGGATTCCGTGGTTCTTGGTTCTCCGGAACCGTCACTCGCCGCGCAGGCGACAAGTTCACGGTCGAGTACGACAACCTTTTGGCCAGTGAGCGGAGCAAGAAGAAGCTCAAAGAGCAGCTCGGCTTCCACCAGCTTCGGCCGCTTCCTCCGGCGGATCCCGGCGCCGAATTCAAGTTCGGCAATGAGGTTGACGCGTTCCACAACGACGGTTGGTGGGAGGGGAGTATCACGAAGGAGCTGGAGAATGGGAAATTCGCTGTGTATTTCAGAGGGTCGAGGGAGCAGATCGAGTTTACCAAGGACCAGCTGAGGATCCATCGCGAGTGGCAGAATAACAAATGGGTTCCGCCGTTTGTGCAGCGAGAACCAAAAGAGAAAGGAAAGGAAGTGATGTCGTCATCAAATGTGACGTCTGGTGATAAAGCTTTGGAAGAGAAGGAAGCGTTGTTGACACCAAATGTTGTTGATGAAACTGCAAAAGAGTCGAATTTTAGCCCAGGGATGCTGGTTGAGGTAAGCAATGACGAGGATGGTTTCCAAGGAGCTTGGTTTACTGCTACTGTTGTTGAAGTAGTTGGAGAGGATAGGTTCTGTATTGAGTACAAGACTCTGTTGGATGATGATTCCAATCTTTTGAAAGAGGAGGCTGATATCTGGCACATAAGGCCCCAGCCCCCAGCAACTTCTGGAAACACTGAATTCAATTATCTTGAAGAAGTGGATGCTCTGCACAACGATGGGTGGTGGGTCGGTGTAATTTCCAAAGTTCTTGGTGACTCAAAGTATGTAGTTTATTTCAGGAACACAGATGAAGAGATAGAGTTTCTGAACTCCCAGTTGAGGCCACATCTGGACTGGATTGGTGGCAAATGGGTCATGGCTTCTAAGGCGTTGAAATTGTGA 1014 0.502 MAPKSKANTPKPSPDAPSSPSSIFKPGTRVEVSSDDDGFRGSWFSGTVTRRAGDKFTVEYDNLLASERSKKKLKEQLGFHQLRPLPPADPGAEFKFGNEVDAFHNDGWWEGSITKELENGKFAVYFRGSREQIEFTKDQLRIHREWQNNKWVPPFVQREPKEKGKEVMSSSNVTSGDKALEEKEALLTPNVVDETAKESNFSPGMLVEVSNDEDGFQGAWFTATVVEVVGEDRFCIEYKTLLDDDSNLLKEEADIWHIRPQPPATSGNTEFNYLEEVDALHNDGWWVGVISKVLGDSKYVVYFRNTDEEIEFLNSQLRPHLDWIGGKWVMASKALKL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271881g00008 337 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 195 333 - -
Stsc271881g00008 337 MobiDBLite consensus disorder prediction 1 36 - -
Stsc271881g00008 337 Gene3D - 11 96 - -
Stsc271881g00008 337 Gene3D - 188 271 - -
Stsc271881g00008 337 CDD Tudor_Agenet_AtDUF_rpt1_3 24 87 - -
Stsc271881g00008 337 Pfam Agenet domain 204 263 IPR008395 -
Stsc271881g00008 337 Pfam Agenet domain 27 87 IPR008395 -
Stsc271881g00008 337 Pfam Agenet domain 275 320 IPR008395 -
Stsc271881g00008 337 CDD Tudor_Agenet_AtDUF_rpt1_3 201 263 - -
Stsc271881g00008 337 CDD Tudor_Agenet_AtDUF_rpt2_4 97 142 - -
Stsc271881g00008 337 CDD Tudor_Agenet_AtDUF_rpt2_4 274 319 - -
Stsc271881g00008 337 SMART agenet_At_2 92 148 IPR014002 -
Stsc271881g00008 337 SMART agenet_At_2 269 325 IPR014002 -
Stsc271881g00008 337 SMART agenet_At_2 199 266 IPR014002 -
Stsc271881g00008 337 SMART agenet_At_2 22 90 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271881g00008 Stsc-Chr271881 75171 77796 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271881g00008 213 323 PHD Transcription Factor Family AT5G58610 29.545 3.43e-06 47.0