Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271881g00003 ATGGACGTTGTTTCAGAACCGACGATCCAGATTAAAGATCTGAAATTCACGTACCCTGGAATCGACGGTCACCCTCCTCCCGGGTCCACTCCTCTAATTCAGGACTTCTCTCTCTCACTGTGTTCCGGCGAGCGATGCCTCCTTGTTGGATCCAATGGCGCTGGCAAGACCACCATTCTCAAGATATTGGGAGGCAAGCACATGGTCGAACCGCACATGGTTCGTGTTCTTGGAAGATCGGCTTTTCATGACACCAATTTGACATCTTCTGGTGATCTCTGTTATCTCGGTGGTGAGTGGAGGCGAGATGTTGCTTTTGCAGGCTATGAGGTTGCAATACAAATGGATGTTTCTGCTGAAAAGATGATATTTGGTGTGGCTGGGACTGATCCTGAAAGAAGAGCGGAGCTAATCAAGGTATTAGATATAGATCTCTCCTGGAGATTGCATAAAGTATCTGATGGTCAAAGAAGAAGAGTGCAAATTTGTATGGGTCTGCTCAAATCATTCAAGGTTCTTCTACTCGATGAGATAACAGTCGACCTTGATGTTCTAGCAAGAGCTGACCTTTTGAAGTTCCTAAGAAAGGAATGTGAAGAGAGGGGTGCCACTATTATATATGCAACACATATATTTGACGGTCTTGAGGATTGGCCAACTAATATAGTTTACGTAGCGCATGGAAAGCTGCAATTAGCCATGCCTATTGATAAAGTCAAGGAAACTAGCAAACTGTCATTAATGAGAACAGTTGAATCATGGCTAAGGAAAGAACGTGATGAAGATAGAAGGAAAAGAAAAGAGAGGAAGGCAGCTGGTCTTCCTGAATTTGATAGGCAACTTGATGGAAGCCGTGTAGCAGGGGGGGATCCAGCTCGTGCTGCTGTTCGAGTAATCAACAATGGCTGGGCAGCAGGGCGATTGACGTCCACCGTTGCTGGTGAGGAGAACTTTATCCTCAGCTCAAACAGAGTATTAAGGCAATAG 987 0.4539 MDVVSEPTIQIKDLKFTYPGIDGHPPPGSTPLIQDFSLSLCSGERCLLVGSNGAGKTTILKILGGKHMVEPHMVRVLGRSAFHDTNLTSSGDLCYLGGEWRRDVAFAGYEVAIQMDVSAEKMIFGVAGTDPERRAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKSFKVLLLDEITVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLEDWPTNIVYVAHGKLQLAMPIDKVKETSKLSLMRTVESWLRKERDEDRRKRKERKAAGLPEFDRQLDGSRVAGGDPARAAVRVINNGWAAGRLTSTVAGEENFILSSNRVLRQ 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271881g00003 328 Gene3D - 5 280 IPR027417 -
Stsc271881g00003 328 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 9 252 IPR003439 GO:0005524
Stsc271881g00003 328 SMART AAA_5 42 229 IPR003593 GO:0016887
Stsc271881g00003 328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 246 IPR027417 -
Stsc271881g00003 328 PANTHER SKFA PEPTIDE EXPORT ATP-BINDING PROTEIN SKFE 8 255 - -
Stsc271881g00003 328 Pfam ABC transporter 34 179 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271881g00003 Stsc-Chr271881 13165 18158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271881g00003 9 206 Calmodulin-binding Proteins AT2G36910 23.721 5.11e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271881g00003 K12608 - gmx:100782386 559.296