Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271880g00031 ATGGCCTTGGTTCTTTATGCAAGTAAAACAAACAAAAATGCTTACAAGGCACGCGTTGCAGCCGAGTATGTGGGTGTGCAAATTGAGATGGCCCCCAATTTTCAGATGCATGTCTCTAACAAAACTCCTGAGTTTCTCAAGATGAATCCTCTTGGCAAGGTTCCTGTGTTAGAGACACCGGATGGCCCTGTATTTGAGAGCAACGCAATTGCCCGCTATGTTGCTCGCTTAAAGGGAGACAACATTTTGTATGGTTCCTCACCTATTGATTATGCCCACATCGAGCAGTGGATTGATTTTTCATCCATGGAGATTGATGCTAATATTAGTAGGTGGTTATATCCCAGAATGGGATATGTTCCTTACCCTCCTCTTCCTCCGCTTGAGGAAGCCGCAATTTCTGGACTGAAGAGAGCTTTGGGAGCTTTGAACACTCACCTTGCCACTAATACTTACCTAGTTGGGCATTCCGTGACCCTTGCTGACATTGTAACGACAATTAATTTGTATTTGGGTTTCAAGGAAATCTTGATTAAGAGTTTCACCTCAGAGTTTCCTCATGTTGAAAGATACTTTTGGACCATGGTTAATCAGCCTAACTTCCGAAAGATATTAGGTGAGGTCAAGCAGGCTGAAGCTGTTCCAACTCCTCCATCTGCAAAGAAGCCTTCCCAGCCAAAAGAATCTAAGCCCAAGGCGAAGGACGAGCCAAAGAAAGAAGCAAAGAAAGAAACAAAGAAAGAGACAGAAAAGCTCGATGAAGAAGAGGAGGAGGCTCCCAAGCCCAAACCCAAGAATCCTCTTGATCTTCTTCCTCCGAGTAAGATGATACTAGATGAGTGGAAAAGGCTGTACTCAAACACCAAAACCAATTTCCGAGAAGTTGCAATCAAAGAAATCCCGAAATTCGTGCTTGATGAATGCTATGATATGGAGCTTTATGAATGGACTAAGGTTGACATATCTGATGAGAATCAAAAGGAGCGAGTCAGTCAGATGATTGAAGATGCTGAACCGTTCGAAGGAGAGCCTCTTTTGGATGCCAAGTGCTTCAAGTGA 1059 0.4363 MALVLYASKTNKNAYKARVAAEYVGVQIEMAPNFQMHVSNKTPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKGDNILYGSSPIDYAHIEQWIDFSSMEIDANISRWLYPRMGYVPYPPLPPLEEAAISGLKRALGALNTHLATNTYLVGHSVTLADIVTTINLYLGFKEILIKSFTSEFPHVERYFWTMVNQPNFRKILGEVKQAEAVPTPPSAKKPSQPKESKPKAKDEPKKEAKKETKKETEKLDEEEEEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKEIPKFVLDECYDMELYEWTKVDISDENQKERVSQMIEDAEPFEGEPLLDAKCFK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271880g00031 352 FunFam Elongation factor 1B gamma 1 74 - -
Stsc271880g00031 352 Pfam Glutathione S-transferase, N-terminal domain 2 76 IPR004045 -
Stsc271880g00031 352 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 298 352 IPR036433 GO:0003746|GO:0006414
Stsc271880g00031 352 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 264 297 IPR036433 GO:0003746|GO:0006414
Stsc271880g00031 352 Coils Coil 238 258 - -
Stsc271880g00031 352 SUPERFAMILY Thioredoxin-like 2 81 IPR036249 -
Stsc271880g00031 352 SUPERFAMILY eEF1-gamma domain 264 352 IPR036433 GO:0003746|GO:0006414
Stsc271880g00031 352 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 264 297 IPR001662 GO:0003746|GO:0006414
Stsc271880g00031 352 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 298 352 IPR044628 GO:0004364
Stsc271880g00031 352 MobiDBLite consensus disorder prediction 212 272 - -
Stsc271880g00031 352 Gene3D Glutaredoxin 1 74 - -
Stsc271880g00031 352 MobiDBLite consensus disorder prediction 225 264 - -
Stsc271880g00031 352 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Stsc271880g00031 352 Pfam Elongation factor 1 gamma, conserved domain 263 298 IPR001662 GO:0003746|GO:0006414
Stsc271880g00031 352 CDD GST_C_EF1Bgamma_like 90 212 - -
Stsc271880g00031 352 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 218 IPR010987 -
Stsc271880g00031 352 SFLD Glutathione Transferase (cytosolic) 3 195 IPR040079 -
Stsc271880g00031 352 Gene3D - 80 215 - -
Stsc271880g00031 352 FunFam Elongation factor 1 gamma 80 217 - -
Stsc271880g00031 352 SUPERFAMILY GST C-terminal domain-like 73 212 IPR036282 -
Stsc271880g00031 352 SFLD Main (cytGST) 3 195 - -
Stsc271880g00031 352 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 298 352 IPR001662 GO:0003746|GO:0006414
Stsc271880g00031 352 SMART EF1G_2 263 338 IPR001662 GO:0003746|GO:0006414
Stsc271880g00031 352 CDD GST_N_EF1Bgamma 3 77 - -
Stsc271880g00031 352 Pfam Glutathione S-transferase, C-terminal domain 132 199 IPR004046 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271880g00031 Stsc-Chr271880 221754 224561 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271880g00031 299 352 Eukaryotic Initiation Factors Gene Family AT1G57720 90.741 1.98e-26 107