Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271880g00029 ATGTCTTCAAAGGGCAAGAGGAAGGAGGAGCAGGACCACGCTTCCGACGGCGACTCTGAAGGCCACCCGCCGCCTAAGAAAACCTCCAAAACTACTGAATCCGACGACCCCGACTCCATCATCGTCTGCGAGATTTCGAAGAACAGGAGGGTTTCGGTGAGGAACTGGCAGGGGAAAATCGTCGTCGACATTCGTGAGTTTTACGTCAAAGATGGCAAGCAACTCCCTGGAAAAAAAGGTATCTCGTTGACCATGGATCAGTGGAATGTGCTTCGTAACCATGTTGAAGAAATTGACAAGGCAGTTACCGAGAATTCCTAA 321 0.5016 MSSKGKRKEEQDHASDGDSEGHPPPKKTSKTTESDDPDSIIVCEISKNRRVSVRNWQGKIVVDIREFYVKDGKQLPGKKGISLTMDQWNVLRNHVEEIDKAVTENS 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271880g00029 106 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 11 105 IPR045125 GO:0003713|GO:0060261
Stsc271880g00029 106 FunFam Putative transcriptional co-activator 33 106 - -
Stsc271880g00029 106 SUPERFAMILY ssDNA-binding transcriptional regulator domain 42 103 IPR009044 GO:0003677|GO:0006355
Stsc271880g00029 106 MobiDBLite consensus disorder prediction 1 34 - -
Stsc271880g00029 106 Gene3D Transcriptional Coactivator Pc4; Chain A 32 106 IPR009044 GO:0003677|GO:0006355
Stsc271880g00029 106 Pfam Transcriptional Coactivator p15 (PC4) 43 94 IPR003173 GO:0003677|GO:0006355
Stsc271880g00029 106 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271880g00029 Stsc-Chr271880 211354 213273 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Stsc271880g00029 PC4 9e-26 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271880g00029 K25815 - gmx:100820368 171.4