Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271880g00022 ATGAAGTTGATGATCGGTGTTGACAGCGCAGCCGCCGCTGCCTCCACCTCCGACGGTGGCCGGAAAGTGCTGGTCGGAGTGAAATTGGATACTCGGAGCCGGCAATTGCTGACGTGGGCGCTCGTTAAGGTAGCGGAGCCCGGCGACCACGTCATTGCACTCCACGTGCTCGACACCATCACTGGTATCGAAGGCACGTCAACGCTGCTATCTCTCGTTAAGACGTTCAATTCCGTTCTCGCCGCATACGAAGGCTTCTGCAATTTAAAGCAGATTGATTTGAAACTGAAAGTGTGTAGAGGCTCTTCAGCGAGGAAGGTTCTGGTGCAGGAAGCGACGTCGTTTGGTGTTGACACTGTGATTCTCGGAACTTCCGCGACGCACCATACAATTCGGTCATCGGTTTCGGTTGCTAAGTACTGCGCTAAGAAATTGCCCAAGTGTGTCTCTGTTTTCGCGATTGATAATAATTGCAAAATCGCGTTCTGCAGAGAAGCTTCTAGGGCACACTCTGATCAAGAGAAATTACAAGAAGGTTCACTACTGTTGCCAAAATCGTTGGTGGCTTGTGGTTCGAAAAACCTGAAGAGTTGTGAGAGTTGTGCAGTGGTGTTGGCACCACCAGAGGATCCTGAAAAAGACAATTCTCTGGCTTTGGTACCGATTCCGAAAGTTGATGATGCTCCTTCTCCTTGTTATTCAATTGTGATGAGGGATTCGAACCAGTCAAAACCCGGTTGGTGGCTGCTTCGCCATGTGTTCCACCCCCGGAAGCATACCTCTAAGTCATCACTGAAAAACTCAAACTCAATTGTTTTCCAGCACCCTTTGCGGCATCCCAGTTGGCATTTTTCAGCTGTAGTCCACCCAGATCAGAAACAGGCTAATGCTACTGACAACAATGATAAGTCCAGTTATGCCTTGGATGGAGAGAGTGGTGCCATTGTGCCATTTGGATCTTCTGCCACCTTTCCTATTTCCTCCCTTTGTGGTGACTTGAGTAGTGTTTCTATAGAATTGTTGGAGGGTTTGCAAGATAAGTACTTGTCTTCGTGTAGATCGTATAGTTTGCAGGAACTTGCATCTGCAACCGCTAGCTTCTCACCTGAAAACTTGGTGGGTAGAGGGGGAAGTAGTTATGTATACAGCGGACAACTTCCAGATGGCAAGGAATTGGCCGTGAAGATTTTGAAACCATCTGTAGATGTGGTGAAGGAGTTTGTTCAGGAAATTGAGATCCTGACAACTTTGGATCACAAGAATATAATATCTCTATCTGGATTTTGTTTTGAGGGAAATCATCTACTACTGGTTTATAATTTTTTATCAAGGGGAAGCCTAGAAGAAAACCTCCATGGCAATAAGAAGGATTGTGATACATTTGGTTGGAAAGAGAGGTTTAAGGTGGCTGTCGGTGTGGCTGAGGCATTGGACTATCTTCACAACGGCTGTCCGCAGGCTGTGGTCCATAGGGATGTAAAATCTTCAAATATCCTTCTTTCAGATGATTTTGAGCCTCAGCTCTCAGATTTTGGACTAGCTAGCTGGGGTACTTCTTCTTCCCATGTTGCTTCTACTGATGTGGCTGGAACTTTTGGATACCTTGCTCCTGAATATTTTATGCATGGTAGAGTTACGGACAAGATTGATGTATATGCATTTGGTGTTGTACTCCTTGAGCTTCTCTCGAATAAGAAGCCCATTGACAATGAATGTCCAAAGGGCCAGGAGAGCCTTGTTATGTGGGCAACACGAATTGTGAAAGGTGGGAAGTTATCCCATTTGCTTGATCCAAACCTAGGCTGTGAATATGACCATTGCCAGATCAACAGAATGATTTTGGCTGCTACTCTCTGCATTAGACGAGAATCTAGATTGCGACCACAAATCAGCCTTATATTGAAACTTCTGCAAGGGGATGAAGAAGTGACTAAGTGGGCAGAACAAGAAGTTAACACACCAGTGGGTCCTGATGGACTTGATGGGGAATCGATTCCAACTAATATTCAGTCCCACCTTAACCTTGCTTTACTGGATGTGGAGGATGACGCAGTTTCTATCAGTAGCACTGAGCCGACTGTCTCCTTGGAGGATTATTTACAGGGAAGATGGAGTCGCTCTTCAAGTTTCAACTAG 2136 0.4593 MKLMIGVDSAAAAASTSDGGRKVLVGVKLDTRSRQLLTWALVKVAEPGDHVIALHVLDTITGIEGTSTLLSLVKTFNSVLAAYEGFCNLKQIDLKLKVCRGSSARKVLVQEATSFGVDTVILGTSATHHTIRSSVSVAKYCAKKLPKCVSVFAIDNNCKIAFCREASRAHSDQEKLQEGSLLLPKSLVACGSKNLKSCESCAVVLAPPEDPEKDNSLALVPIPKVDDAPSPCYSIVMRDSNQSKPGWWLLRHVFHPRKHTSKSSLKNSNSIVFQHPLRHPSWHFSAVVHPDQKQANATDNNDKSSYALDGESGAIVPFGSSATFPISSLCGDLSSVSIELLEGLQDKYLSSCRSYSLQELASATASFSPENLVGRGGSSYVYSGQLPDGKELAVKILKPSVDVVKEFVQEIEILTTLDHKNIISLSGFCFEGNHLLLVYNFLSRGSLEENLHGNKKDCDTFGWKERFKVAVGVAEALDYLHNGCPQAVVHRDVKSSNILLSDDFEPQLSDFGLASWGTSSSHVASTDVAGTFGYLAPEYFMHGRVTDKIDVYAFGVVLLELLSNKKPIDNECPKGQESLVMWATRIVKGGKLSHLLDPNLGCEYDHCQINRMILAATLCIRRESRLRPQISLILKLLQGDEEVTKWAEQEVNTPVGPDGLDGESIPTNIQSHLNLALLDVEDDAVSISSTEPTVSLEDYLQGRWSRSSSFN 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271880g00022 711 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 20 155 - -
Stsc271880g00022 711 Gene3D Phosphorylase Kinase; domain 1 339 441 - -
Stsc271880g00022 711 Gene3D Transferase(Phosphotransferase) domain 1 442 654 - -
Stsc271880g00022 711 SUPERFAMILY Protein kinase-like (PK-like) 349 637 IPR011009 -
Stsc271880g00022 711 CDD USP_Like 22 149 - -
Stsc271880g00022 711 SMART serkin_6 367 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271880g00022 711 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 337 441 - -
Stsc271880g00022 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 488 500 IPR008271 GO:0004672|GO:0006468
Stsc271880g00022 711 ProSitePatterns Protein kinases ATP-binding region signature. 373 395 IPR017441 GO:0005524
Stsc271880g00022 711 Pfam Protein kinase domain 370 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271880g00022 711 PANTHER OS08G0249100 PROTEIN 76 647 IPR046958 -
Stsc271880g00022 711 ProSiteProfiles Protein kinase domain profile. 367 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271880g00022 711 Pfam Universal stress protein family 21 149 IPR006016 -
Stsc271880g00022 711 Gene3D HUPs 20 154 IPR014729 -
Stsc271880g00022 711 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 21 151 - -
Stsc271880g00022 711 FunFam Putative receptor-like serine/threonine-protein kinase 442 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271880g00022 Stsc-Chr271880 162500 166619 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271880g00022 355 638 Trihelix Transcription Factor Family AT1G68690 43.051 2.28e-70 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc271880g00022 Pkinase 3.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271880g00022 - - adu:107463283 1259.97