LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc271880g00022	ATGAAGTTGATGATCGGTGTTGACAGCGCAGCCGCCGCTGCCTCCACCTCCGACGGTGGCCGGAAAGTGCTGGTCGGAGTGAAATTGGATACTCGGAGCCGGCAATTGCTGACGTGGGCGCTCGTTAAGGTAGCGGAGCCCGGCGACCACGTCATTGCACTCCACGTGCTCGACACCATCACTGGTATCGAAGGCACGTCAACGCTGCTATCTCTCGTTAAGACGTTCAATTCCGTTCTCGCCGCATACGAAGGCTTCTGCAATTTAAAGCAGATTGATTTGAAACTGAAAGTGTGTAGAGGCTCTTCAGCGAGGAAGGTTCTGGTGCAGGAAGCGACGTCGTTTGGTGTTGACACTGTGATTCTCGGAACTTCCGCGACGCACCATACAATTCGGTCATCGGTTTCGGTTGCTAAGTACTGCGCTAAGAAATTGCCCAAGTGTGTCTCTGTTTTCGCGATTGATAATAATTGCAAAATCGCGTTCTGCAGAGAAGCTTCTAGGGCACACTCTGATCAAGAGAAATTACAAGAAGGTTCACTACTGTTGCCAAAATCGTTGGTGGCTTGTGGTTCGAAAAACCTGAAGAGTTGTGAGAGTTGTGCAGTGGTGTTGGCACCACCAGAGGATCCTGAAAAAGACAATTCTCTGGCTTTGGTACCGATTCCGAAAGTTGATGATGCTCCTTCTCCTTGTTATTCAATTGTGATGAGGGATTCGAACCAGTCAAAACCCGGTTGGTGGCTGCTTCGCCATGTGTTCCACCCCCGGAAGCATACCTCTAAGTCATCACTGAAAAACTCAAACTCAATTGTTTTCCAGCACCCTTTGCGGCATCCCAGTTGGCATTTTTCAGCTGTAGTCCACCCAGATCAGAAACAGGCTAATGCTACTGACAACAATGATAAGTCCAGTTATGCCTTGGATGGAGAGAGTGGTGCCATTGTGCCATTTGGATCTTCTGCCACCTTTCCTATTTCCTCCCTTTGTGGTGACTTGAGTAGTGTTTCTATAGAATTGTTGGAGGGTTTGCAAGATAAGTACTTGTCTTCGTGTAGATCGTATAGTTTGCAGGAACTTGCATCTGCAACCGCTAGCTTCTCACCTGAAAACTTGGTGGGTAGAGGGGGAAGTAGTTATGTATACAGCGGACAACTTCCAGATGGCAAGGAATTGGCCGTGAAGATTTTGAAACCATCTGTAGATGTGGTGAAGGAGTTTGTTCAGGAAATTGAGATCCTGACAACTTTGGATCACAAGAATATAATATCTCTATCTGGATTTTGTTTTGAGGGAAATCATCTACTACTGGTTTATAATTTTTTATCAAGGGGAAGCCTAGAAGAAAACCTCCATGGCAATAAGAAGGATTGTGATACATTTGGTTGGAAAGAGAGGTTTAAGGTGGCTGTCGGTGTGGCTGAGGCATTGGACTATCTTCACAACGGCTGTCCGCAGGCTGTGGTCCATAGGGATGTAAAATCTTCAAATATCCTTCTTTCAGATGATTTTGAGCCTCAGCTCTCAGATTTTGGACTAGCTAGCTGGGGTACTTCTTCTTCCCATGTTGCTTCTACTGATGTGGCTGGAACTTTTGGATACCTTGCTCCTGAATATTTTATGCATGGTAGAGTTACGGACAAGATTGATGTATATGCATTTGGTGTTGTACTCCTTGAGCTTCTCTCGAATAAGAAGCCCATTGACAATGAATGTCCAAAGGGCCAGGAGAGCCTTGTTATGTGGGCAACACGAATTGTGAAAGGTGGGAAGTTATCCCATTTGCTTGATCCAAACCTAGGCTGTGAATATGACCATTGCCAGATCAACAGAATGATTTTGGCTGCTACTCTCTGCATTAGACGAGAATCTAGATTGCGACCACAAATCAGCCTTATATTGAAACTTCTGCAAGGGGATGAAGAAGTGACTAAGTGGGCAGAACAAGAAGTTAACACACCAGTGGGTCCTGATGGACTTGATGGGGAATCGATTCCAACTAATATTCAGTCCCACCTTAACCTTGCTTTACTGGATGTGGAGGATGACGCAGTTTCTATCAGTAGCACTGAGCCGACTGTCTCCTTGGAGGATTATTTACAGGGAAGATGGAGTCGCTCTTCAAGTTTCAACTAG	2136	0.4593	MKLMIGVDSAAAAASTSDGGRKVLVGVKLDTRSRQLLTWALVKVAEPGDHVIALHVLDTITGIEGTSTLLSLVKTFNSVLAAYEGFCNLKQIDLKLKVCRGSSARKVLVQEATSFGVDTVILGTSATHHTIRSSVSVAKYCAKKLPKCVSVFAIDNNCKIAFCREASRAHSDQEKLQEGSLLLPKSLVACGSKNLKSCESCAVVLAPPEDPEKDNSLALVPIPKVDDAPSPCYSIVMRDSNQSKPGWWLLRHVFHPRKHTSKSSLKNSNSIVFQHPLRHPSWHFSAVVHPDQKQANATDNNDKSSYALDGESGAIVPFGSSATFPISSLCGDLSSVSIELLEGLQDKYLSSCRSYSLQELASATASFSPENLVGRGGSSYVYSGQLPDGKELAVKILKPSVDVVKEFVQEIEILTTLDHKNIISLSGFCFEGNHLLLVYNFLSRGSLEENLHGNKKDCDTFGWKERFKVAVGVAEALDYLHNGCPQAVVHRDVKSSNILLSDDFEPQLSDFGLASWGTSSSHVASTDVAGTFGYLAPEYFMHGRVTDKIDVYAFGVVLLELLSNKKPIDNECPKGQESLVMWATRIVKGGKLSHLLDPNLGCEYDHCQINRMILAATLCIRRESRLRPQISLILKLLQGDEEVTKWAEQEVNTPVGPDGLDGESIPTNIQSHLNLALLDVEDDAVSISSTEPTVSLEDYLQGRWSRSSSFN	711

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Stsc271880g00022	711	FunFam	probable receptor-like serine/threonine-protein kinase At5g57670	20	155	-	-
Stsc271880g00022	711	Gene3D	Phosphorylase Kinase; domain 1	339	441	-	-
Stsc271880g00022	711	Gene3D	Transferase(Phosphotransferase) domain 1	442	654	-	-
Stsc271880g00022	711	SUPERFAMILY	Protein kinase-like (PK-like)	349	637	IPR011009	-
Stsc271880g00022	711	CDD	USP_Like	22	149	-	-
Stsc271880g00022	711	SMART	serkin_6	367	637	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Stsc271880g00022	711	FunFam	probable receptor-like serine/threonine-protein kinase At5g57670	337	441	-	-
Stsc271880g00022	711	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	488	500	IPR008271	GO:0004672\|GO:0006468
Stsc271880g00022	711	ProSitePatterns	Protein kinases ATP-binding region signature.	373	395	IPR017441	GO:0005524
Stsc271880g00022	711	Pfam	Protein kinase domain	370	575	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc271880g00022	Stsc-Chr271880	162500	166619	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc271880g00022	355	638	Trihelix Transcription Factor Family	AT1G68690	43.051	2.28e-70	240

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Stsc271880g00022		Pkinase	3.9e-41	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc271880g00022	-		-	adu:107463283	1259.97

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