Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271880g00009 ATGGCTCCATTTCGCATATTGAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGTCATTTTCCTGAGCCTACACATGATCCTGTCATCCAGATTGCTAATCTGGTTACATTACAAGGAGAAGATCAGCCACTCATTCGTAATGTGATGACCCTTAATTCATGTTCTCCCATAGTTGGTGTTGACGTGATGTCGTTCGATACAGAAAGAGAAGTCCTGCTGGCCTGGAGGGATTTTATTCGTGAAGTTGACCCTGATATTATAATTGGATATAACATCTGCAAATTTGACCTGCCATATCTTATTGAGAGAGCTCAAGCGCTGAAAATAGCAGAATTTCCTATTCTGGGCCGTATCAGGAACAGTAGGGTCCGAGTAAAGGATACAACTTTCTCATCTAGACAGTATGGAACCAGGGAAAGTAAAGAAGTAACTGTAGAAGGGAGAGTTCAGTTTGATCTGCTCCAGGTTATGCAAAGAGACTACAAATTAAGTTCTTATTCTTTGAATTCTGTTTCAGCACACTTTCTTTCTGAGCAGAAAGAGGATGTTCACCATTCTATTATATCTGATCTTCAGAATGGAAATGCAGAAACTAGGAGGCGCCTTGCTGTGTATTGTTTAAAGGATGCTTATCTCCCTCAACGGCTTTTGGATAAATTGATGTTCATTTATAATTATGTGGAGATGGCTCGAGTTACAGGTGTCCCAATTTCTTTTCTGCTTTCCAGGGGCCAAAGCATTAAGGTACTTTCTCAACTCCTTAGGAAGGCAAAGCAGAAGAACCTGGTTCTTCCTAATGTAAAACAGGCTGGTTCAGAACAAGGAACATATGAAGGTGCTACTGTGTTGGAGGCAAGGGCTGGGTTCTATGAAAAGCCAATTGCTACTTTAGATTTTGCATCTTTGTATCCATCTATTATGATGGCCTATAATTTATGTTATTGCACCCTGGTAACTCCGGAAGATGTTCGGAAACTTAACCTCCCTCCAGAGTCAGTGAACAAAACTCCATCTGGGGAAACATTTGTTAAATCAAATTTGCAGAAGGGAATACTTCCTGAAATTCTTGAAGAGCTTTTAGCAGCACGGAAAAGGGCAAAAGCAGATTTAAAGGAGGCAAAAGATCCCCTTGAAAAAGCCGTGCTTGATGGTAGACAACTAGCCCTGAAGATTAGTGCAAATTCTGTATATGGGTTTACTGGAGCAACTATTGGTCAGTTACCATGCTTGGAGATATCGTCAAGTGTAACAAGCTATGGTCGACAAATGATCGAGCACACCAAAAAAATTGTGGAAGATAAATTTACAACTCTTAATGGCTATGAACACAACGCCGAGGTAATATATGGTGACACGGATTCAGTCATGGTTCAGTTTGGTGTTTCTTCTGTAGAAGAGGCTATGAACTTGGGGAGAGAAGCTGCTGAATATATTAGTGGAACTTTTACAAAAGTTTACTTTCCATATCTCCTAATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCTGACAAATTTGACAAAATGGACACTAAAGGTATTGAAACAGTTCGGAGAGACAATTGTTTATTAGTCAAAAACCTTGTGAACGATTGCCTACACAAAATATTGATTGATAGGGACATCCCTGGGGCAGTTCAATACGTTAAAAACGCAATTTCAGATCTTCTTATGAACAGAATGGATTTATCACTTTTGGTTATTACAAAGGGTTTGACAAAGACAGGAGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCTGAAAGAATGCGCAAGCGAGATGCTGCCACTGCTCCAAATGTTGGGGATAGAGTACCGTATGTTATTATTAAAGCTGCAAAGGGTGCCAAGGCTTATGAGAGATCAGAGGATCCAATATATGTCCTGGAGAACAACATACCCATAGATCCCCAATACTATCTTGAGAATCAAATCAGCAAGCCAATTCTAAGGATTTTTGAGCCAATTCTGAAGAATGCTAGCAAGGAACTTCTGCATGGAAGCCACACAAGATCTATTTCCATTTCTACTCCATCAAACAGTGGCATCATGAAATTTGCTAAGAAACAGCTAACTTGCATTGGTTGCAAAGCTTTACTTGGCAAGGGAAATCACACTCTTTGCCCTCATTGCAAAGGAAGGGAAGCTGAGCTGTACTGCAAAACAGTGACACATGTGTCCGAGCTAGAAATGCTTTTTGGGAGGTTGTGGACACAGTGCCAGGAATGCCAAGGTTCACTTCATCAGGACGTTCTCTGTACAAGCCGTGATTGTCCTATTTTTTATCGACGAAAAAAGGCTCAGAAAGATATGGCGGAAGCAAAGCTGCAACTTGACCGATGGAACTTCTAA 2364 0.4061 MAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEDQPLIRNVMTLNSCSPIVGVDVMSFDTEREVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAQALKIAEFPILGRIRNSRVRVKDTTFSSRQYGTRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVLPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPPESVNKTPSGETFVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKIVEDKFTTLNGYEHNAEVIYGDTDSVMVQFGVSSVEEAMNLGREAAEYISGTFTKVYFPYLLISKKRYAGLFWTKPDKFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQLTCIGCKALLGKGNHTLCPHCKGREAELYCKTVTHVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLDRWNF 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271880g00009 787 CDD DNA_polB_delta_exo 1 227 - -
Stsc271880g00009 787 SMART polmehr3 2 461 IPR006172 GO:0000166|GO:0003676|GO:0003887
Stsc271880g00009 787 Gene3D - 515 670 IPR042087 -
Stsc271880g00009 787 FunFam DNA polymerase 350 402 - -
Stsc271880g00009 787 Pfam DNA polymerase family B, exonuclease domain 2 171 IPR006133 -
Stsc271880g00009 787 SUPERFAMILY DNA/RNA polymerases 260 662 IPR043502 -
Stsc271880g00009 787 NCBIfam DNA polymerase (pol2) 269 658 - -
Stsc271880g00009 787 ProSitePatterns DNA polymerase family B signature. 449 457 IPR017964 GO:0000166|GO:0003676
Stsc271880g00009 787 Gene3D Palm domain of DNA polymerase 276 498 IPR023211 -
Stsc271880g00009 787 FunFam DNA polymerase 42 275 - -
Stsc271880g00009 787 Pfam DNA polymerase family B 235 660 IPR006134 GO:0000166|GO:0003677
Stsc271880g00009 787 SUPERFAMILY Ribonuclease H-like 2 258 IPR012337 -
Stsc271880g00009 787 Gene3D - 3 221 IPR036397 GO:0003676
Stsc271880g00009 787 PRINTS DNA-directed DNA-polymerase family B signature 294 307 IPR006172 GO:0000166|GO:0003676|GO:0003887
Stsc271880g00009 787 PRINTS DNA-directed DNA-polymerase family B signature 447 455 IPR006172 GO:0000166|GO:0003676|GO:0003887
Stsc271880g00009 787 PRINTS DNA-directed DNA-polymerase family B signature 386 398 IPR006172 GO:0000166|GO:0003676|GO:0003887
Stsc271880g00009 787 Gene3D Helix hairpin bin 350 402 - -
Stsc271880g00009 787 Pfam C4-type zinc-finger of DNA polymerase delta 697 768 IPR025687 -
Stsc271880g00009 787 FunFam DNA polymerase 515 671 - -
Stsc271880g00009 787 CDD POLBc_delta 276 661 - -
Stsc271880g00009 787 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 1 753 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271880g00009 Stsc-Chr271880 59779 68672 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271880g00009 1 787 Core DNA Replication Machinery Family AT5G63960 84.975 0.0 1434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271880g00009 K02327 - gmx:100817379 1485.32