Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271878g00055 ATGGAGAACTGTGAGGATTACAAGAATTACTGGGAGACCAACATGTTCCTCCAAACCCAAGAGTTGGACACCAGCTGGCCATTCGATGAGGCCTTCTCCGGCGGTTACTATGATTCGAGCTCGCCGGACGGCGGAGCTTCATCGGCGGCATCTAAGAACATTGTCTCGGAGAGGAATAGGAGGAAGAAGCTCAACGAAAGGCTCTTTGCACTTAGGGCAGTTGTCCCCAACATCACCAAGATGGATAAGGCATCAATCATAAAGGATGCAATTGAGTACATAGAGCACTTGCACGAGCAAGAGAGGAGGATCCAAGATGAAATCATGGAGCTTGAATCTGCTAGCAAGCTCAAGAATCCAATTATGGAACCACCTGCTGCCTCCTATGATTTTGACCATCAGGATCTTCCAGTTTTGCTGAGGTCTAAGAAGAACAGACCTGATACCCTTCTCTTTGAAACCTCATCCGCTCCTTCTTCCTCAAGGAATAACACCTATTTCCCCATTGAACTCATTGATCTGAGGGTAACTTACAAGGGAGAGAAGATATTTGTAGTGAGCTTGACATGCAGCAAAAGGACAGATACAATGGTGAAACTGTGTGAAGTCTTTGAATCTTTGAAGCTTAAGATCATCACTGCTAATATTACTTCTTTCTCGGGAACACTCTTGAAGACACTCTTTGTTGAGGCAGATGAAGAGGAAAAAGATAATCTGAAGATAAGGATCCAGACAGCCATTGCAGCTCTTAATGATCCCCAAAGCCCAATGAGCATCTGA 780 0.45 MENCEDYKNYWETNMFLQTQELDTSWPFDEAFSGGYYDSSSPDGGASSAASKNIVSERNRRKKLNERLFALRAVVPNITKMDKASIIKDAIEYIEHLHEQERRIQDEIMELESASKLKNPIMEPPAASYDFDHQDLPVLLRSKKNRPDTLLFETSSAPSSSRNNTYFPIELIDLRVTYKGEKIFVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGTLLKTLFVEADEEEKDNLKIRIQTAIAALNDPQSPMSI 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271878g00055 259 Coils Coil 94 117 - -
Stsc271878g00055 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Stsc271878g00055 259 Gene3D - 46 114 IPR036638 GO:0046983
Stsc271878g00055 259 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 114 - -
Stsc271878g00055 259 Pfam Helix-loop-helix DNA-binding domain 55 98 IPR011598 GO:0046983
Stsc271878g00055 259 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 45 241 - -
Stsc271878g00055 259 SMART finulus 54 103 IPR011598 GO:0046983
Stsc271878g00055 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 113 IPR036638 GO:0046983
Stsc271878g00055 259 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271878g00055 Stsc-Chr271878 257658 260261 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271878g00055 5 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 57.269 8.51e-79 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc271878g00055 HLH 6.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271878g00055 - - qsu:112012381 337.035