LGRPv2

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc271878g00055	ATGGAGAACTGTGAGGATTACAAGAATTACTGGGAGACCAACATGTTCCTCCAAACCCAAGAGTTGGACACCAGCTGGCCATTCGATGAGGCCTTCTCCGGCGGTTACTATGATTCGAGCTCGCCGGACGGCGGAGCTTCATCGGCGGCATCTAAGAACATTGTCTCGGAGAGGAATAGGAGGAAGAAGCTCAACGAAAGGCTCTTTGCACTTAGGGCAGTTGTCCCCAACATCACCAAGATGGATAAGGCATCAATCATAAAGGATGCAATTGAGTACATAGAGCACTTGCACGAGCAAGAGAGGAGGATCCAAGATGAAATCATGGAGCTTGAATCTGCTAGCAAGCTCAAGAATCCAATTATGGAACCACCTGCTGCCTCCTATGATTTTGACCATCAGGATCTTCCAGTTTTGCTGAGGTCTAAGAAGAACAGACCTGATACCCTTCTCTTTGAAACCTCATCCGCTCCTTCTTCCTCAAGGAATAACACCTATTTCCCCATTGAACTCATTGATCTGAGGGTAACTTACAAGGGAGAGAAGATATTTGTAGTGAGCTTGACATGCAGCAAAAGGACAGATACAATGGTGAAACTGTGTGAAGTCTTTGAATCTTTGAAGCTTAAGATCATCACTGCTAATATTACTTCTTTCTCGGGAACACTCTTGAAGACACTCTTTGTTGAGGCAGATGAAGAGGAAAAAGATAATCTGAAGATAAGGATCCAGACAGCCATTGCAGCTCTTAATGATCCCCAAAGCCCAATGAGCATCTGA	780	0.45	MENCEDYKNYWETNMFLQTQELDTSWPFDEAFSGGYYDSSSPDGGASSAASKNIVSERNRRKKLNERLFALRAVVPNITKMDKASIIKDAIEYIEHLHEQERRIQDEIMELESASKLKNPIMEPPAASYDFDHQDLPVLLRSKKNRPDTLLFETSSAPSSSRNNTYFPIELIDLRVTYKGEKIFVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGTLLKTLFVEADEEEKDNLKIRIQTAIAALNDPQSPMSI	259

Showing 1 to 1 of 1 entries

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Stsc271878g00055	259	Coils	Coil	94	117	-	-
Stsc271878g00055	259	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	48	97	IPR011598	GO:0046983
Stsc271878g00055	259	Gene3D	-	46	114	IPR036638	GO:0046983
Stsc271878g00055	259	FunFam	Basic helix-loop-helix (BHLH) DNA-binding superfamily protein	45	114	-	-
Stsc271878g00055	259	Pfam	Helix-loop-helix DNA-binding domain	55	98	IPR011598	GO:0046983
Stsc271878g00055	259	PANTHER	TRANSCRIPTION FACTOR SCREAM2-RELATED	45	241	-	-
Stsc271878g00055	259	SMART	finulus	54	103	IPR011598	GO:0046983
Stsc271878g00055	259	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	48	113	IPR036638	GO:0046983
Stsc271878g00055	259	Coils	Coil	229	249	-	-

Showing 1 to 9 of 9 entries

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc271878g00055	Stsc-Chr271878	257658	260261	Dispersed/Tandem

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc271878g00055	5	230	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT5G57150	57.269	8.51e-79	235

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Stsc271878g00055		HLH	6.3e-12	No_clan

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc271878g00055	-		-	qsu:112012381	337.035

Showing 1 to 1 of 1 entries