Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271878g00054 ATGGATAAGGCATCAATCATAAAGGATGCAATTGAGTACATAGAGCACTTGCACGAGCAAGAGAGGAGGATCCAAGATGAAATCATGGAGCTTGAATCTGCTAGCAAGCTCAAGAATCCAATTATGGAACCACCTGCTGCCTCCTATGATTTTGACCATCAGGATCTTCCAGTTTTGCTGAGGTCTAAGAAGAACAGACCTGATACCCTTCTCTTTGAAACCTCATCCGCTCCTTCTTCCTCAAGGAATAACACCTATTTCCCCATTGAACTCATTGATCTGAGGGTAACTTACAAGGGAGAGAAGATATTTGTAGTGAGCTTGACATGCAGCAAAAGGACAGATACAATGGTGAAACTGTGTGAAGTCTTTGAATCTTTGAAGCTTAAGATCATCACTGCTAATATTACTTCTTTCTCGGGAACACTCTTGAAGACACTCTTTGTTGAGGCAGATGAAGAGGAAAAAGATAATCTGAAGATAAGGATCCAGACAGCCATTGCAGCTCTTAATGATCCCCAAAGCCCAATGAGCATCTGA 540 0.4185 MDKASIIKDAIEYIEHLHEQERRIQDEIMELESASKLKNPIMEPPAASYDFDHQDLPVLLRSKKNRPDTLLFETSSAPSSSRNNTYFPIELIDLRVTYKGEKIFVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGTLLKTLFVEADEEEKDNLKIRIQTAIAALNDPQSPMSI 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271878g00054 179 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 162 - -
Stsc271878g00054 179 Coils Coil 149 169 - -
Stsc271878g00054 179 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 33 IPR036638 GO:0046983
Stsc271878g00054 179 Coils Coil 14 37 - -
Stsc271878g00054 179 Gene3D - 1 39 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271878g00054 Stsc-Chr271878 257658 260261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271878g00054 1 150 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 51.333 1.40e-38 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271878g00054 - - gmx:100803916 236.498