Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271878g00046 ATGACTAGTTACGGAAAGGAAGACATAGAAGCTCCTCGGAGCTCCGCTGACATCGACGACGGAGGCTCCTCTTCCAGTCCCTTTGATATTGCCAGAACCAAAGATGCTTCCGTTCAACGCCTCAAGCGTTGGAGGCAAGCAGCACTTGTGCTTAATGCTTCTCGCCGATTTCGCTACACCTTGGACCTGAAGAAAGAAGAAGAAAAGGAGCAAGTTCTGAGAAAGATTAGAGGGCATGTTCAAGTCATCAGAGCAGCGTATCTTTTCAAGGAGGCTGCAAATAAATTGAATAGTGAATTAGGAATTGTCCCACATCCTCCAAGCTCCACTGGAGAATTTCAAATTGGGGAAGAGCTACTTTCTTCAATTGCAAGGGATCATAATACTGCTGCTCTGCAAGAAAAAGGAGGGGTTGAGGGGATAGCAAGTTTGTTGAAGACCAATTTAGAAAAGGGGATTCAAGGTGATGAGGCTGACTTGATTAGGCGGAGGACTGCTTTTGGCTCGAACAACTATCCTCGAAAGAAAGGAAGAAGTTTCTTGATGTTTGTTTGGGATGCATGCAAGGATCTGACCTTGATTATTTTAATGGTAGCTGCTGCGGCTTCATTAGTACTGGGCATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGTGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGCTGTAAGTGATTATAAGCAGTCTCTTCAGTTTCGGGACCTAAATGAGGAAAAGAGAAACATACGTTTGGAGGTAATTAGAGGTGGTAGAAGAGTTGAGATCTCAATTTATGACATTGTTGTTGGTGATGTCATACCCCTTAATATTGGTGACCAGGTCCCTGCTGATGGAATTTTGATCGTCGGTCACTCTCTTGCAGTTGATGAATCTAGTATGACAGGGGAGAGCAATATTGTTGATAAGAATTCTAAGAACCCTTTTCTGATATCTGGTTGTAAAGTTGCAGATGGCAGTGGTGTTATGCTGGTAACGGCTGTTGGTATTAATACCGAATGGGGGCTTCTAATGGCTAACATTTCAGAAGACAATGGTGAAGAAACACCTTTGCAGGTACGCTTGAATGGTCTTGCCACCTTCATCGGTATAATTGGGCTCTCTGTGGCTGTTGTCGTTCTGATTGTGCTACTGGCCAGGTATTTCTCTGGGCATACTAAAGACCCAAATGGAAATATTCAATTTATAGGAGGCAAGACTAAACTCAGTAAGGCAATTGATGGAGCAATTAAGATAGTCACTGTTGCGGTCACCATTGTAGTGGTTGCAGTACCTGAAGGACTCCCTTTAGCAGTTACCTTAACACTTGCCTACTCTATGAGAAAAATGATGGCAGATAAAGCTTTGGTTCGTAGGCTTTCCGCCTGTGAGACTATGGGCTCAGCCACAATCATTTGCAGTGATAAGACCGGAACATTGACTATGAATCAGATGACTGTGGTTGAAGCTTTAATTGGTGGGGAGAAGATTGATCCTCCTCACAAGAAGTCAGGGCTCTCTCCTATACTCTGCTCCTTGCTGATTGAAGGAGTTGCACAGAACACCAATGGCAGTGTTTTTGTACCTGAGGGTGGTAACGAGGTTGAGGTTTCTGGTTCACCAACGGAGAAGGCAATTTTACATTGGGCTGTTCAGCTTGGGATGAATTTTAAAGCTGCTAGATCAGAATCATCAATTATTCATGTCTTCCCATTCAATTCGGAAAAGAAACGAGGCGGGGTTGCAGTACAGACGACTGAACCTGAAGTCCACATACATTGGAAAGGGGCTGCTGAGATAGTCCTAGGCTGCTGTACACAGTATATGGATGTAAATGATCAGTTGATGAAGATGGATGAAGAAAAGATGAACTATTTTAGAGGAGTTATTGAAGATATGGCATCTCGTAGTCTACGTTGTGTTGCCATTGCATATAGATTATATGAAATGGAAAAAGTTCCAACAGGTGAAGACCTTTCTCACTGGTCATTACCTGAGGATAATCTCATCTTATTGGCTATTGTTGGTCTGAAGGATCCTTGTCGACCTGGTGTGAAAGATGCGGTGAAGCTTTGCCAGAAAGCTGGTGTTAAGGTAAAAATGGTCACCGGTGACAATGTCAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTGATTCATATGCTGATGCTACAGAGCCAAATGTCATCATCGAAGGAAAAGACTTCCGTGCATTGCAAGATGATCAGAGATTAGCAATTGTTGAAAAGATATCAGTTATGGGACGATCGTCTCCAAACGATAAGCTTTTGCTCGTGCAAGCACTGCGGAGGAAACAGCATGTTGTTGCTGTAACTGGAGATGGAACTAATGATGCTCCAGCCTTACATGAGGCTGATATCGGTCTTGCAATGGGCATTCAAGGTACAGAAGTTGCGAAAGAGAGCTCTGATATCATTATATTGGATGACAATTTTGCTTCAGTTGTAAAGGTTAGTCCACTATTTTTCACTCTTGTTATAAATGTTATTGCTGCATTTTCATCGGGTGATGTACCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGACACACTTGGAGCTCTAGCCCTGGCAACTGAACCACCAACTGATCATCTGATGTATCGTGATCCAATGGGTCGAAGAGAACCTCTTATATCAAATATTATGTGGAGGAATCTGCTGATACAGGCAATTTACCAAGTGTCTGTCCTGCTTATACTCAATTTCCGAGGCATCTCCATACTGAAATTGACACACAAGTCCAGTGACAATGCACTCAAAGTGAAGGACACTTTGATATTCAATGCCTTTGTTCTCTGTCAAGTTTTTAATGAATTTAATGCCCGTAAGCCAGATGAGTTCAATATATTCAAGGGAGTCACAAAAAACTATCTCTTTATGGGGATAGTGGGATTAACTGTTGTGCTTCAGATCATTATCATTGAACTTCTCGGGAAGTTCACAAAAACAGTCAAGCTAACTTGGCAACAGTGGCTCATTTGTGTCATAATTGGATTTATCAGCTGGCCTCTTGCTGTGATTGGAAAATTGATACCAGTACCAAAAAAGCAGCTCAGTGACTTTTTTAAGGGTTTTGTTAACCGTATTCGAAATTGTTTAGGTCTACAACCAAAACTGTGA 3174 0.4209 MTSYGKEDIEAPRSSADIDDGGSSSSPFDIARTKDASVQRLKRWRQAALVLNASRRFRYTLDLKKEEEKEQVLRKIRGHVQVIRAAYLFKEAANKLNSELGIVPHPPSSTGEFQIGEELLSSIARDHNTAALQEKGGVEGIASLLKTNLEKGIQGDEADLIRRRTAFGSNNYPRKKGRSFLMFVWDACKDLTLIILMVAAAASLVLGIKSEGIKEGWYDGGSIAFAVILVIVVTAVSDYKQSLQFRDLNEEKRNIRLEVIRGGRRVEISIYDIVVGDVIPLNIGDQVPADGILIVGHSLAVDESSMTGESNIVDKNSKNPFLISGCKVADGSGVMLVTAVGINTEWGLLMANISEDNGEETPLQVRLNGLATFIGIIGLSVAVVVLIVLLARYFSGHTKDPNGNIQFIGGKTKLSKAIDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATIICSDKTGTLTMNQMTVVEALIGGEKIDPPHKKSGLSPILCSLLIEGVAQNTNGSVFVPEGGNEVEVSGSPTEKAILHWAVQLGMNFKAARSESSIIHVFPFNSEKKRGGVAVQTTEPEVHIHWKGAAEIVLGCCTQYMDVNDQLMKMDEEKMNYFRGVIEDMASRSLRCVAIAYRLYEMEKVPTGEDLSHWSLPEDNLILLAIVGLKDPCRPGVKDAVKLCQKAGVKVKMVTGDNVKTAKAIAVECGILDSYADATEPNVIIEGKDFRALQDDQRLAIVEKISVMGRSSPNDKLLLVQALRRKQHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVSPLFFTLVINVIAAFSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMYRDPMGRREPLISNIMWRNLLIQAIYQVSVLLILNFRGISILKLTHKSSDNALKVKDTLIFNAFVLCQVFNEFNARKPDEFNIFKGVTKNYLFMGIVGLTVVLQIIIIELLGKFTKTVKLTWQQWLICVIIGFISWPLAVIGKLIPVPKKQLSDFFKGFVNRIRNCLGLQPKL 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271878g00046 1057 Gene3D - 536 685 IPR023299 GO:0000166
Stsc271878g00046 1057 NCBIfam calcium-translocating P-type ATPase, PMCA-type 127 1031 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Stsc271878g00046 1057 SFLD p-type atpase 460 832 IPR044492 -
Stsc271878g00046 1057 PRINTS Sodium/potassium-transporting ATPase signature 597 615 - -
Stsc271878g00046 1057 PRINTS Sodium/potassium-transporting ATPase signature 471 492 - -
Stsc271878g00046 1057 PRINTS Sodium/potassium-transporting ATPase signature 221 241 - -
Stsc271878g00046 1057 Pfam Ca2+-ATPase N terminal autoinhibitory domain 26 68 IPR024750 GO:0005516
Stsc271878g00046 1057 Pfam Cation transporting ATPase, C-terminus 852 1029 IPR006068 -
Stsc271878g00046 1057 NCBIfam HAD-IC family P-type ATPase 753 873 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc271878g00046 1057 NCBIfam HAD-IC family P-type ATPase 418 501 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc271878g00046 1057 SFLD Haloacid Dehalogenase 460 832 - -
Stsc271878g00046 1057 Gene3D - 686 802 IPR023214 -
Stsc271878g00046 1057 Gene3D - 36 92 - -
Stsc271878g00046 1057 SUPERFAMILY Calcium ATPase, transmembrane domain M 135 1031 IPR023298 -
Stsc271878g00046 1057 ProSitePatterns E1-E2 ATPases phosphorylation site. 480 486 IPR018303 -
Stsc271878g00046 1057 SMART Cation_ATPase_N_a_2 132 208 IPR004014 -
Stsc271878g00046 1057 FunFam Calcium-transporting ATPase 803 1033 - -
Stsc271878g00046 1057 PANTHER CATION TRANSPORTING ATPASE 103 1031 - -
Stsc271878g00046 1057 Gene3D - 139 331 - -
Stsc271878g00046 1057 FunFam Calcium-transporting ATPase 36 92 - -
Stsc271878g00046 1057 FunFam Calcium-transporting ATPase 186 243 - -
Stsc271878g00046 1057 Gene3D - 803 1034 - -
Stsc271878g00046 1057 FunFam Calcium-transporting ATPase 678 831 - -
Stsc271878g00046 1057 Gene3D - 332 499 - -
Stsc271878g00046 1057 MobiDBLite consensus disorder prediction 1 31 - -
Stsc271878g00046 1057 Pfam E1-E2 ATPase 256 456 - -
Stsc271878g00046 1057 Pfam Cation transporter/ATPase, N-terminus 135 203 IPR004014 -
Stsc271878g00046 1057 SUPERFAMILY HAD-like 476 872 IPR036412 -
Stsc271878g00046 1057 PRINTS P-type cation-transporting ATPase superfamily signature 478 492 - -
Stsc271878g00046 1057 PRINTS P-type cation-transporting ATPase superfamily signature 786 805 - -
Stsc271878g00046 1057 PRINTS P-type cation-transporting ATPase superfamily signature 302 316 - -
Stsc271878g00046 1057 PRINTS P-type cation-transporting ATPase superfamily signature 810 822 - -
Stsc271878g00046 1057 PRINTS P-type cation-transporting ATPase superfamily signature 678 689 - -
Stsc271878g00046 1057 PRINTS P-type cation-transporting ATPase superfamily signature 700 710 - -
Stsc271878g00046 1057 FunFam Calcium-transporting ATPase 234 354 - -
Stsc271878g00046 1057 FunFam Calcium-transporting ATPase 488 685 - -
Stsc271878g00046 1057 Pfam haloacid dehalogenase-like hydrolase 476 800 - -
Stsc271878g00046 1057 FunFam Calcium-transporting ATPase 9 plasma membrane-type 332 502 - -
Stsc271878g00046 1057 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 485 682 IPR023299 GO:0000166
Stsc271878g00046 1057 SUPERFAMILY Calcium ATPase, transduction domain A 256 350 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271878g00046 Stsc-Chr271878 200381 210486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271878g00046 11 1048 Primary Pumps ATPases AT4G29900 69.887 0.0 1481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271878g00046 K01537 - gmx:100792945 1611.28