Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271878g00034 ATGGAACAACAGATAGCCATACAAGAAGCTGCTTCCGCTGGTTTGAAAAGCATGGAGCATCTTATCCGTTTTCTCTCTTCACAATCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCATAACAACCTTGATTGCACAGAAATCACCGACTTCACAGTCTCAAAGTTCAAGCAGGTTATTAACTTGTTAAATCGCACCGGTCATGCGCGCTTCCGTCGTGCACCTCCTCCTTCTCCTCCTCAGGGGTTTGCGAAGCCTGTTCAGGTCAACAAGCCATCAATTAATAACTCTACCGACTTATCGTTTTCTCATCAATACTCAGATTCTAACAACAAAAACAACCATAACAATAAGGACACGTCATGTAGCACATCGATTTCTCCTCCCTTGTCCACCACCACCTCCTCCTTCATGTCCACCATCACCGGAGACGGTAGCGTCTCCGACGGTAAGATAGGTCCTTCCATCATCGCCGCTGGGAAGCCTCCTCTCTCCTCATCACACCGTAAAAGGTGTCACGACGCCACCCTTTCGTCGGGAAAAGCCTCATCCTCCTCCTCCCAGTGTCATTGCTCCAAGAGAAGGAAATCCCGTGTGAAACGAGTGGTTAGAATGCCAGCAGTAAGCTCAAGGATTGCAGATATTCCAGCGGACGAATACTCATGGAGAAAATACGGTCAAAAACCTATCAAGGGATCACCATACCCTCGAGGGTACTACAAGTGCAGTAGCGTGAGAGGGTGTCCAGCGAGGAAGCACGTGGAGAGAGCACAAGACGACCCTAACATGCTCATCGTTACCTACGAGGGTGACCACCGTCACACCCAAACACAACCCCTTGGATTTTCCCCTCATCACCTTTCATCAACGGCTCTCGTTGCGGACACGCGTGCCACCTAA 909 0.4906 MEQQIAIQEAASAGLKSMEHLIRFLSSQSPSSSSSSSSSSSSHNNLDCTEITDFTVSKFKQVINLLNRTGHARFRRAPPPSPPQGFAKPVQVNKPSINNSTDLSFSHQYSDSNNKNNHNNKDTSCSTSISPPLSTTTSSFMSTITGDGSVSDGKIGPSIIAAGKPPLSSSHRKRCHDATLSSGKASSSSSQCHCSKRRKSRVKRVVRMPAVSSRIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERAQDDPNMLIVTYEGDHRHTQTQPLGFSPHHLSSTALVADTRAT 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271878g00034 302 MobiDBLite consensus disorder prediction 91 149 - -
Stsc271878g00034 302 SMART WRKY_cls 219 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc271878g00034 302 Gene3D WRKY domain 205 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc271878g00034 302 FunFam WRKY transcription factor 65 203 280 - -
Stsc271878g00034 302 Pfam WRKY DNA -binding domain 221 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc271878g00034 302 Pfam Plant zinc cluster domain 172 217 IPR018872 -
Stsc271878g00034 302 SUPERFAMILY WRKY DNA-binding domain 217 279 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc271878g00034 302 MobiDBLite consensus disorder prediction 72 199 - -
Stsc271878g00034 302 MobiDBLite consensus disorder prediction 26 45 - -
Stsc271878g00034 302 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 3 281 IPR044810 GO:0003700
Stsc271878g00034 302 ProSiteProfiles WRKY domain profile. 214 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271878g00034 Stsc-Chr271878 129163 131121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271878g00034 1 280 WRKY Transcription Factor Family AT2G24570 50.485 2.61e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc271878g00034 WRKY 5.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271878g00034 - - var:108322692 339.732