Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271878g00030 ATGACTGGGCTTTCTCTTGCTCTTGCTGGAACAGTAGTGCCAAACAAGAAGAAACTCAAACTCATGAAACCCACCATCAACAACAATAATGAAGACAAGAAGAAATTATTCTCTTCTCATCATCACAACAACAACAAAGGCGGCGACATGGTCTTGAGAAAGAAACTCAGGCTTACAAAGGAACAATCAGCCATGCTTGAACACAGCTTTAACCAGCATACCATTCTTAATTCAGCCCAGAAAAAATCACTTGCTGAACAATTGAATCTAAAGACCAGACAAATTGAAGTTTGGTTTCAGAACAGAAGAGCCAGGACGAAGCTGAAACAGACGGAGGTGGAGTATGAGTTATTGAAGAAAAGGTGCCAAAGTCTAACGGATGAGAACCGAAGGTTGAAGAAGGAGTTGCAGGAACTAACTGCAATCAAAACTTCACCCACTACTACTACTACTGTCGCTATGTGTTCTTCATGCCACAACAAACTACTTCATCCAAATTAA 501 0.4072 MTGLSLALAGTVVPNKKKLKLMKPTINNNNEDKKKLFSSHHHNNNKGGDMVLRKKLRLTKEQSAMLEHSFNQHTILNSAQKKSLAEQLNLKTRQIEVWFQNRRARTKLKQTEVEYELLKKRCQSLTDENRRLKKELQELTAIKTSPTTTTTVAMCSSCHNKLLHPN 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271878g00030 166 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981|GO:0006355
Stsc271878g00030 166 Pfam Homeobox associated leucine zipper 109 142 IPR003106 GO:0006355|GO:0043565
Stsc271878g00030 166 MobiDBLite consensus disorder prediction 27 48 - -
Stsc271878g00030 166 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 24 160 - -
Stsc271878g00030 166 Coils Coil 101 142 - -
Stsc271878g00030 166 Gene3D - 50 115 - -
Stsc271878g00030 166 SMART halz 109 152 IPR003106 GO:0006355|GO:0043565
Stsc271878g00030 166 SMART HOX_1 51 113 IPR001356 GO:0003677
Stsc271878g00030 166 Pfam Homeodomain 53 107 IPR001356 GO:0003677
Stsc271878g00030 166 SUPERFAMILY Homeodomain-like 53 118 IPR009057 -
Stsc271878g00030 166 CDD homeodomain 53 110 IPR001356 GO:0003677
Stsc271878g00030 166 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271878g00030 Stsc-Chr271878 115915 116756 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271878g00030 38 158 Homeobox Transcription Factor Family AT3G60390 57.480 1.29e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc271878g00030 Homeodomain 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271878g00030 K09338 - gmx:100812222 155.606