Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271878g00026 ATGGAACCGGGCATGAGATCTGGTGGCCCTTCTGGGGTTTTGGTGAAGAACAGGAGCTCTTCAGGGTGTTTGATTGTAAGGAAGAAAGGTGATGGATTGAGTGGTGGGGTTGGCAGCTCTTCGAGCTCCAGGAAGATGTATGAATCGAAGAAAGTGAAGAAGAGGCCCAAAGTTGAGCTGAGTAGAGATTCGGGATCAAGTGATGATCTTCCGATGCCGCCTGCTAGAAGGCTTGGTCCTGAAACCATTCGAGTATGCAATGGTTTGAACGCATTTGAGAGAGGCATGGGTGGTGGCAGTGAAATTGCCAGGAAGAGGGACAGGTTTGAGCAGATTAGGCGTAATGGGGATGATTTATGTGAGGAGGATGGGTTGGAGAGGAAGGATAGGAAGCGCAGTAAGATTGATGCGTTTGGTTCTGATCAATATGATGATGCTATGGACATGGACATGATGAGGAGGCACCTTGAAAATAATGGGGGTGGTTTAGGAGGAGGAAGGTTTGCTGGGACAATGCATGCAGCTAGAAGTGGCACTGATAGGGATTTTGAATCTGGTTCAAGCAGACACGTTATTGATAAGAGGAAAAACTCCTATCACAGCAGGGCAACTGGCTCATACCCAGGAGATGCTGTTGACAATAATAGGTTCAAGATGAACAGGGATGCAGCTCAGCGCCCTCTGCCATTGCTGAGGGAAAAGTTTAATTGTGGAGAAACTATCAGGATTCAGGGGAAAAATGGTGTTTTGAAGGTGATGGTTAAGAAGGATAAGATGGGTGGGCCACCAGAACACTATGATAATTGTAAACCTGCAGAAATCAGACAAAGTTTGAGGGCTGAAGGGACTGCCAAGAAGAATGTTCTGATACATCCTTCATCTTACATGGAAACAAAACCTGTTGAGAAACAAGATTTAAATGTTAGGCCAGAGAAGAAACTGGTAGCAACAAGAAAATCATCAAGTAAGGACAGTAAGGGCGATGAGCAGGATTCAGATAACAGCGACACTTCATTGAATGTGGGCGTAAAAGGCAGTGAAGTTCCCAAGTCTTCAAAGAGACTAGCATCTGAAGATGAACAGACTCCGAAGCATGAAAAACTCCAGACTACAGCAATTAAAGAAGGAAAAATAAGGCGTGGTAGTGGCACAGAAAAGCAGAAGCTTCGGGAAAAAATTCGGGAGATGCTTCTTATTTCAGGTTGGACCATAGACTATCGCCCTCGGAGGAACAGAGACTATCTTGATGCAGTCTACATCAATCCTGCGGGTACAGCCTATTGGTCTATCATCAAGGCCTATGAGGCACTTCAGAAGCAATTGAATGATGATGACCCTGGGGCCAAGCCTAAAGGGGAGAGCTCTTCTTTTGCTCCTATCGCAGATGATGTGCTCAGTCAGTTGACGAGGAAAACTCGGAAGAAGATGGAGAAAGAGTTTAAGAAGAAGAAGGAAAGAGATAATATAGAGTGTGATAGCGAAAAAGAGCGTCAATTTAAGATATCTTCCAGCATCAAGCATGATATGAATGGTACGAATAGTGATAGCAATCAAGATAAATTAAGCTCCTTTTTAAAGCAAGGAAGTAAGTCAATGAAAACTACAATGATTGAAGATGCTGTCAACAGTGGTAGCTCTAATATCCAGAACATTGTCTCTCAATCAAATGATGGGAATGACAAATCACTTTCAGGAAACAATCCTCATGCTTTACATGGGAGGAAAAGTAGAAAAGACGGAAGATGCACTTTGTTAATTCGTAATTCTAACATCGGTTCAGGTTCAGAATCTGATGACTTTGTTCCATATACTGGCAAACGGACGGTGCTTTCCTGGTTGGTTGACTCAGGGGCTGTACAATTAAGCCAAAAGGTTCAGTATCGTAGAAAGAAGCGTGTGATGCTGGAGGGATGGATCACAAGAGATGGCATTCATTGTGGCTGCTGCAGTAAAATCCTCACAGTTTCAAAGTTTGAGCTTCATGCAGGAAGTAAATTGCGCCAGCCATATCAAAACATTTATTTGGACTCTGGAGATTCTCTTCTACAGTGTCAGATAGATGCATGGAGTAGACAAGAGAAGTCTGGGAAAATCAGTTTCCATTCAGTAGATATTGATGGTAATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCTGAGTTGCTTGGATATACAGATGCTTCCCCCTGGTGAATGGCATTGTCCAAATTGCACTTGCAAATTTTGTGGAGTAGCCAGTGGACCTTCGAATAAAGAATATGAATTAACTATAAATTCCCTGCATACTTGCAACTTATGTGAGAAAAAATTTCATGAATGTTGTACAAAGGAGATGGACACCCTTCCTACTAACTCTGATTTCTCAGGGCCTTCCTTTTGCGGAAAGGGCTGCAAAGAGCTCTTTGAGCATTTGAAGAAATACCTTGGTACAAAGCATGAATTAGATGCAGGGCTCACTTGGTCTCTCATTCGTAGAACAGATGATGACTCAGATGCAGCTAGTAGGGGGATTACCCAGAGGGTGGAATGCAATTCGAAGCTAGCTGTTGCACTCACTGTGATGGATGAATGTTTTTTACCAGTTGTTGATAGGAGGAGTGGGATCAATATACTACATAATGTTTTATATAATACTGGTTCAAACTTCAGTCGGTTGAATTATACTGGATTTTATACTGCTATTTTGGAGCGAGGGGATGAAATGATTTCTGCTGCATCAATCAGGTTCCGTGGGACCAAGTTAGCTGAGATGCCATTCATTGGAACTCGCCATATGTATAGGAATCAGGGGATGTGCCGCCGGCTCTTTCGTGCAATTGAATTGGTTCTTTGCTCTTTGAAGGTTGAGAAACTGGTTATTCCAGCAATTTCTGAACTCATTCATACATGGACAACAGTTTTTGGCTTCACGCATCTTGAGAACTCACTCAGACAAGAAATGAGGTCATTGAGTATGTTGATTTTCCCTGGTATAGATATGTTGCAGAAGCTGCTAGCGGAGCAAGGAAAACTTGAGGGTGTTGAGAAAATTGAAAATAGAGATGAGGTTAATACTAAGCTCAGTATGGCTAGTAGGTTGGACATGAATTCTTCAGCTCTGCAAACTCCTCATGGAACCGATGATGCTAGTTCAAATCCTGACAATGACATAAGCGATGAATCAAGCGATGCTTCTCAAGAACAAAACAACGAAATCTTGGCTGACCGGAATGTGTGA 3267 0.4273 MEPGMRSGGPSGVLVKNRSSSGCLIVRKKGDGLSGGVGSSSSSRKMYESKKVKKRPKVELSRDSGSSDDLPMPPARRLGPETIRVCNGLNAFERGMGGGSEIARKRDRFEQIRRNGDDLCEEDGLERKDRKRSKIDAFGSDQYDDAMDMDMMRRHLENNGGGLGGGRFAGTMHAARSGTDRDFESGSSRHVIDKRKNSYHSRATGSYPGDAVDNNRFKMNRDAAQRPLPLLREKFNCGETIRIQGKNGVLKVMVKKDKMGGPPEHYDNCKPAEIRQSLRAEGTAKKNVLIHPSSYMETKPVEKQDLNVRPEKKLVATRKSSSKDSKGDEQDSDNSDTSLNVGVKGSEVPKSSKRLASEDEQTPKHEKLQTTAIKEGKIRRGSGTEKQKLREKIREMLLISGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYEALQKQLNDDDPGAKPKGESSSFAPIADDVLSQLTRKTRKKMEKEFKKKKERDNIECDSEKERQFKISSSIKHDMNGTNSDSNQDKLSSFLKQGSKSMKTTMIEDAVNSGSSNIQNIVSQSNDGNDKSLSGNNPHALHGRKSRKDGRCTLLIRNSNIGSGSESDDFVPYTGKRTVLSWLVDSGAVQLSQKVQYRRKKRVMLEGWITRDGIHCGCCSKILTVSKFELHAGSKLRQPYQNIYLDSGDSLLQCQIDAWSRQEKSGKISFHSVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHLSCLDIQMLPPGEWHCPNCTCKFCGVASGPSNKEYELTINSLHTCNLCEKKFHECCTKEMDTLPTNSDFSGPSFCGKGCKELFEHLKKYLGTKHELDAGLTWSLIRRTDDDSDAASRGITQRVECNSKLAVALTVMDECFLPVVDRRSGINILHNVLYNTGSNFSRLNYTGFYTAILERGDEMISAASIRFRGTKLAEMPFIGTRHMYRNQGMCRRLFRAIELVLCSLKVEKLVIPAISELIHTWTTVFGFTHLENSLRQEMRSLSMLIFPGIDMLQKLLAEQGKLEGVEKIENRDEVNTKLSMASRLDMNSSALQTPHGTDDASSNPDNDISDESSDASQEQNNEILADRNV 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271878g00026 1088 MobiDBLite consensus disorder prediction 351 387 - -
Stsc271878g00026 1088 SMART PHD_3 714 755 IPR001965 -
Stsc271878g00026 1088 MobiDBLite consensus disorder prediction 1044 1088 - -
Stsc271878g00026 1088 MobiDBLite consensus disorder prediction 285 387 - -
Stsc271878g00026 1088 PANTHER PHD FINGER PROTEIN 12 333 1083 IPR042163 GO:0003714|GO:0045892
Stsc271878g00026 1088 Pfam PHD-finger 715 757 IPR019787 -
Stsc271878g00026 1088 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 703 812 IPR013083 -
Stsc271878g00026 1088 ProSitePatterns Zinc finger PHD-type signature. 715 754 IPR019786 -
Stsc271878g00026 1088 MobiDBLite consensus disorder prediction 177 191 - -
Stsc271878g00026 1088 ProSiteProfiles Zinc finger PHD-type profile. 712 757 IPR019787 -
Stsc271878g00026 1088 MobiDBLite consensus disorder prediction 545 578 - -
Stsc271878g00026 1088 MobiDBLite consensus disorder prediction 166 191 - -
Stsc271878g00026 1088 Pfam Tify domain binding domain 637 687 IPR032308 -
Stsc271878g00026 1088 MobiDBLite consensus disorder prediction 25 81 - -
Stsc271878g00026 1088 MobiDBLite consensus disorder prediction 545 566 - -
Stsc271878g00026 1088 MobiDBLite consensus disorder prediction 302 333 - -
Stsc271878g00026 1088 SUPERFAMILY FYVE/PHD zinc finger 700 756 IPR011011 -
Stsc271878g00026 1088 CDD PHD2_CHD_II 715 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271878g00026 Stsc-Chr271878 99828 107271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271878g00026 4 1074 PHD Transcription Factor Family AT4G14920 47.032 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc271878g00026 TDBD 1.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271878g00026 - - mtr:25485216 1477.61