Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271878g00024 ATGGGATCTCAGAAGAAATCACCGTCAGGAGCATTGTTTTTCTTCCTTGGAGGGATGATAGTGCTTATCATACTGCTTCTTCTTCTCTTTTTCTATTGGATGCGTATGAAGAAACGGTCACCACAAGAGGCAGAGGGAAAAATGGAAAAGGAACCTTCAATAATGACTCAACACCAAGATGATGAGGCAGTGAAGGTAACATTTTCAAGCAAACAACTGCAAGGATCAACGAACTTCTTTAGTGGGAACCTTCGGACAATTAGCCACTTTGACTTCTACACATTGAGGAGGGCAACAAGGAATTTCCATCGCAAAAATCTTCTTGGAAGTGGTGGTTTTGGACCTGTTTATCAGGGAAAGTTAGGAGATGGAAGGCTAATTGCTGTTAAGCAATTGTGTGCTGAGAAATCCCAACAAGGAGAGAAAGAGTTCTTGGCAGAGGTGAGATTAATCACAAGCATCCAACACAAGAATCTTGTTCGCCTTCTTGGTTGTTGCACTGATGGATCTCAAAGGATACTTGTCTATGAATACATGAACAACAGAAGTTTGGACCACATCCTATATGGAAAAAGTGAGCAATTCCTGGATTGGAGAACTAGATTCCAAATTATTCTAGGAGTGGCTAGGGGATTGCAGTATCTACATGAGGATTCACATTTGAGAATTGTTCATAGGGACATCAAAGCAAGCAACATTCTCCTTGATGACAAGTTTCAGCCAAAGATTGGAGACTTTGGCCTAGCTCGATTCTTTCCTGAAGATCAAGCTTACCTAAGCACTCAATTTGCTGGAACATTAGGTTATACAGCACCAGAATATGCTATTAGAGGAGAGCTATCAGAAAAGGCTGATATCTATAGCTTTGGAGTTCTTGTTCTTGAAATCATCAGTTGCAGGAGAAATACAGATCTTACTTTGCCATCAGAAATGCAATACCTCCCTGAATATGCATGGAAGCTTAATGAGAAGTCAATGGTGATGGAGCTTGTGGATGGAAGGCTAAGAGAAGATGGATTGGTGGAGAAGGATGTGATGAGAGCATTCCACGTGGCATTCTTGTGCCTACAGCCTCATGCAAGTCAGAGACCAGCCATGTCAGAGATAGTGGCACTGTTGACATTCAAAGCTGAGATGGTGTCAACACCAATGAGGCCATCATTCTTTGATCGGAGACGCAAGAAGCATGATGAGGACATCACATCTTGGGAAGCCATATCAGAAACTTTCTCAGCCACAATCATAAGTGATTCTAATTTTCCAACATCTGAAGATCGCTGA 1281 0.4192 MGSQKKSPSGALFFFLGGMIVLIILLLLLFFYWMRMKKRSPQEAEGKMEKEPSIMTQHQDDEAVKVTFSSKQLQGSTNFFSGNLRTISHFDFYTLRRATRNFHRKNLLGSGGFGPVYQGKLGDGRLIAVKQLCAEKSQQGEKEFLAEVRLITSIQHKNLVRLLGCCTDGSQRILVYEYMNNRSLDHILYGKSEQFLDWRTRFQIILGVARGLQYLHEDSHLRIVHRDIKASNILLDDKFQPKIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEIISCRRNTDLTLPSEMQYLPEYAWKLNEKSMVMELVDGRLREDGLVEKDVMRAFHVAFLCLQPHASQRPAMSEIVALLTFKAEMVSTPMRPSFFDRRRKKHDEDITSWEAISETFSATIISDSNFPTSEDR 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271878g00024 426 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 179 383 - -
Stsc271878g00024 426 Pfam Protein tyrosine and serine/threonine kinase 104 372 IPR001245 GO:0004672|GO:0006468
Stsc271878g00024 426 Gene3D Phosphorylase Kinase; domain 1 80 178 - -
Stsc271878g00024 426 CDD STKc_IRAK 108 374 - -
Stsc271878g00024 426 ProSiteProfiles Protein kinase domain profile. 102 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271878g00024 426 SUPERFAMILY Protein kinase-like (PK-like) 84 376 IPR011009 -
Stsc271878g00024 426 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 18 405 - -
Stsc271878g00024 426 SMART serkin_6 102 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271878g00024 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Stsc271878g00024 426 Gene3D Transferase(Phosphotransferase) domain 1 179 385 - -
Stsc271878g00024 426 FunFam Cysteine-rich receptor-like protein kinase 10 66 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271878g00024 Stsc-Chr271878 94227 96308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271878g00024 90 423 Receptor kinase-like Gene Family AT1G56120 47.305 4.93e-101 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc271878g00024 PK_Tyr_Ser-Thr 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271878g00024 - - ccaj:109792436 598.586