Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271878g00014 ATGCCTACTCCTCTTCTTGATCTCAATCAAGATCTAATTCCAAACCATGATGAACATGAGCACTACCCCTTCACTGCTACTGCAACTACTCATCAACAACAACAACACTCTTCTCTTTCATTTCCAATCCTCCCCAACCCTCATCATCACAAGGTCGTGGATGAAAAGATTATTGATGATCCTAATAGTAGTAGTGGATCACGGGATCATTCAGAAAAACCTCACGAAAGTAGCGGAATCATCAAGCTGGTTTGGAAGAATAAGAAACAAGAAGCAGCAGAAGAAGAAGAAGTGATTCCAAAGTGGATGCCTTCCAAGATGAGGATGATGCGCAAGATGATGGTATCATCCTCCGATCATCAACAACAACAACAAGAACAGATTCCTATTATTATTGGAACTACTGACCACCACAATCACAATCAGAGTACTACTGCTAATAATACTGTTAGGGTTTGCTCTGATTGTCTCACCACTAAGACCCCTCTCTGGAGAAGTGGACCAAGAGGCCCCAAGTCACTTTGCAATGCCTGTGGTATACGACAAAGAAAGGCGAGGCGTGCCGCCATGGCTGCCGCTGCCGCAAATGGTAGCACACTGGCGGCAGCTGAGGCATCTGGGAAGCTAAACAAATTTGGTAGAAGCAAAGAGAAGCTCAAGCCCAAAAGTGGTGGTGGTGATTATCAGCTGATGAAAAAGAAGCGCAATAATAATAATAACAAGGTTATTGGAGGTGGTGGGAGATCAGGGAAGCAATCTCATCATAATAATTATTGTTTTGAAGATTTGAGATTAAGTTTACTAAGCAAGAATTTGGCTGTTCATCAAGTATTCCCTCAGGATGAGAAAGAGGCTGCGATCCTTCTCATGGCCTTATCCTATGGTCTTGTTCTTGGATGA 900 0.4311 MPTPLLDLNQDLIPNHDEHEHYPFTATATTHQQQQHSSLSFPILPNPHHHKVVDEKIIDDPNSSSGSRDHSEKPHESSGIIKLVWKNKKQEAAEEEEVIPKWMPSKMRMMRKMMVSSSDHQQQQQEQIPIIIGTTDHHNHNQSTTANNTVRVCSDCLTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAMAAAAANGSTLAAAEASGKLNKFGRSKEKLKPKSGGGDYQLMKKKRNNNNNKVIGGGGRSGKQSHHNNYCFEDLRLSLLSKNLAVHQVFPQDEKEAAILLMALSYGLVLG 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271878g00014 299 ProSitePatterns GATA-type zinc finger domain. 153 178 IPR000679 GO:0006355|GO:0043565
Stsc271878g00014 299 MobiDBLite consensus disorder prediction 58 80 - -
Stsc271878g00014 299 MobiDBLite consensus disorder prediction 232 252 - -
Stsc271878g00014 299 Pfam GATA zinc finger 153 186 IPR000679 GO:0006355|GO:0043565
Stsc271878g00014 299 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 145 187 - -
Stsc271878g00014 299 SMART GATA_3 147 199 IPR000679 GO:0006355|GO:0043565
Stsc271878g00014 299 Gene3D - 142 241 IPR013088 GO:0006355|GO:0008270
Stsc271878g00014 299 MobiDBLite consensus disorder prediction 58 79 - -
Stsc271878g00014 299 ProSiteProfiles GATA-type zinc finger domain profile. 147 183 IPR000679 GO:0006355|GO:0043565
Stsc271878g00014 299 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 29 297 - -
Stsc271878g00014 299 MobiDBLite consensus disorder prediction 216 252 - -
Stsc271878g00014 299 FunFam GATA transcription factor 21 147 229 - -
Stsc271878g00014 299 MobiDBLite consensus disorder prediction 28 47 - -
Stsc271878g00014 299 MobiDBLite consensus disorder prediction 28 42 - -
Stsc271878g00014 299 CDD ZnF_GATA 152 180 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271878g00014 Stsc-Chr271878 70881 72378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271878g00014 101 299 C2C2-Gata Transcription Factor Family AT4G26150 43.556 2.41e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc271878g00014 GATA 3.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271878g00014 - - aip:107642994 304.679