Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271878g00005 ATGAGGGTGGTATTATTGGCAATGATGCTGCAACTTCTTAAGCTCTGCATCATTTTTCTTTCTATTGCTGTCCCAGGATCCAAAGGGTATACTGTATCTCCATCTCCAGCATTCCTTCCTGTGATTCCTTCTATACCAGAGGCACTTAGTCCTATCCATCATGAAGGCTCAATTGGAAGCAATGCACCAAGTTTACCATTACTTCCACATGGCCTTGTTGTACCTCCATCTCCAGCAAGAGGTTCATGGACAACCATTGCCCCAAGCTCTCCAGCAGTAGCAAATGGGTCATTCTTGCTTCCTCCTGATGCATTACCACTACCTGTAACAGCTCCAACTCCTCAGAAGCATAATAAGGACATAGAAACATCCTCAACTCCAAGTCCAACTACTATAGCATTGTCACCACCACATGAGGGTGTTCCTTTTCCTCCAATAGCACAAGGAAATGCACCACCGCCCTTAAGATCAAGTCCACCACAAGCTGAACATGGAACTCTAGCACCTAACATTGTTAATGGGAATGCAAATCAGAGTCACTCAGAAGAGCCGGTTTCGCCATCACCAGCTACAACACCTGCTATCAATTTGCCGAAAATTTCACCAGCCAGCCAACCAACCAATAATGGAAGTTTTCCTCCTCAGGAGAGCACAAATAAAGGCCACAATCCAGAACCAGTTACACCAGAATCTGCTGCATCACCACCATGGAAAGCAGAACATAATCAACCACCACCACCACCAGAAGCACATCTTATTAGTCCATCCATATTGCCTGCACCTGTTGCATCACCACCAAGTTCATTTCCAGTGAATCCGCCACTGTTCCATCCAATTATTCCATCAACATTACCAGCACCCGTTGCCTCTCCCAAGTCATCTCCTTCTGGAAGCTTCAATTGGAAAAATGGTGGTGCACCACCAATTGCTGTACCTTTATACAAATCACCAAAGCCACTTCCAGCTGTAGTACATTCCCCTGCTCAAGCTCCTGCTGCACATAAAGCAAGGCAAATTGATCATGCTCCTGAGCCTAAAATTCCTAATAACGAAAAGCATACTCCTGAATTACCACCTTCTGCCTCATCACATGAGCATCATCATTGGAACACAACTACCAGTTCTTCTGCTCCCCCACTACCATCACCATACATGGTTTCTCCCCTCACTTCAAATCATCAAGATAAAGCAATTCCTCCTTCATTACAACCAGAAAGTGGGAAAAGGCATCATGTTTCACCTCCAATAATGAACCAAAGTTCTTCAATTCCTTCATTCTCTTCCCCAACTCATTCACCCATGACCCAAGTTTCATCAGCTCCTTCTCCATCAATGGAATTTGCTCCTCACCCAACTGAAATTCAAGCTCCATTTCTTCCCCCTAGAGTATCTCCTTCTCCCCCAAAGACACCAACCCTGCCTCGAGTTCAAGCATTGCCACCACCACCTCCAAATGAAGAGTGTTCATCAACCGTTTGCTTAGAGCCTTATACAAACTCTCCACCCGGAGAACCTTGCAGATGTGTTTGGCCCATGCGAGTCGGCCTCCGCCTCAGTGTCTCTCTTTATACCTTCTTCCCTTTGGTTTCAGAGCTAGCTTCTGAAATTGCCACTGGAGTTTTCATGAAGCAAAGTCAAGTTCGGATTATGGGAGCAAATGCAGACGAGCAACCTGAGAAAACAGTTGTCTTAATTGATCTGGTACCACTTGGTGAAATCTTTGACAGTACTACAGCACTTTTCACTTCCACTAGATTCTGGCATAAAAAGATTGCTATAAAAGCTTCCTACTTTGGAGACTATGATGTATTATATGTGAGCTATCCAGGTTTGGCTCCTTCTCCTCCTTTACCACCTTCAACCATTTCCATCATTGATGGTGGTCCATATTCCAACAATGGAGGGACAATAAAGCCCCTTGGCGTCGACATACAGAAGAGGCAGCATAAAAGTGGACTTAGCAGAGGCATAGTAGCCATTATAACTGTTTCAGTTTTTCTAGCACTTGTGTTATGTGCTGCTGCTGCAGCAGCCTGGGTTATGCTCAAGTATGGAGATCATGTTACTCAACCGGCATCAACACCACGGATTTCACAACCTTCTCTTACCAAACCACCAGGTAATGCTGCATCATTGGTTGGTGGAGGTGGGGTTGGTTCTGCTTCGACATCATTTCGATCTAGCATTGCTGCTTATACAGGTTCTGCTAAGACTTTCAGTGCTAATGACATTATAAAGGCCACTGATAACTTTGATGGTTCAAGAATACTCGGAGAAGGTGGTTTTGGACTTGTTTATGGTGGCATCCTTGAAGATGGAACAAAAGTGGCAGTCAAGGTTATAAAGAGGGAGGATCATCACGGCGATCGCGAGTTCTTAGCCGAAGTTGAGATGCTTAGCCGTCTTCACCATAGAAATTTGGTCAAGTTGATTGGGATATGTACTGAGGAAAGTGTCCGCTGCTTGATTTATGAACTTGTTCCAAACGGCAGCGTGGAATCCCACTTACATGGAATTGACAGGGAAAATAGCTCACTTGGTTGGAGTGCTCGAATGAAGATAGCTCTGGGTGCGGCTCGCGGTCTAGCCTATCTGCATGAAGATTCGAGTCCCCGAGTTATACACCGGGACTTCAAATCAAGCAACATATTGCTGGAAGATGATTTCACACCAAAGGTATCGGATTTCGGATTGGCTAGAACAGCAACAGATGAGAATAATAGACACATATCAACGCGCGTCATGGGAACTTTCGGTTATGTGGCTCCAGAGTATGCAATGACAGGACACCTTCTTGTTAAGAGTGATGTTTACAGCTACGGCGTTGTTCTTCTTGAGCTCTTAACAGGAAGAAAGCCAGTGGACATGTCACAACCTCCAGGTCAAGAGAACCTTGTTGCGTGGGCTCGTCCGCTTCTCGCGAGCCGAGAAGGATTGGAGGCGATAGTGGATCCATGTCTTGGAGGAGATGTGGCTTTTGAGAGTGTGGCCAAAGTTGCAGCCATTGCTTCAATGTGTGTGCAGCCAGAGGTATCGAACCGGCCTTTCATGGGGGAGGTTGTGCAGGCCTTAAAACTGGTGTGTAATGAATGTGAGGAAGCGAAAGAAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGTGGTTCTAGAAGATCTACACAAGATTTGGATGTGAGAGGGAGTAATGTGTCTGAGATGGAATTGTGGGGCCGTGTTGATGTTGAGAGAGGATTCAGTTGTTCAGTTAGAGTGGGGAGGGAGGAGGAGGAATCTGGATCTTTTAGAAGACACTCGTATTCGGGACCTCTGGTGACGGGAAGAAGCAGGCAGTTGTGGCATATTATGAGACGCCTTTCTGGTGGAACTGTTAGTGAACATTCAACTCTCTTCAAGTTATAG 3396 0.4573 MRVVLLAMMLQLLKLCIIFLSIAVPGSKGYTVSPSPAFLPVIPSIPEALSPIHHEGSIGSNAPSLPLLPHGLVVPPSPARGSWTTIAPSSPAVANGSFLLPPDALPLPVTAPTPQKHNKDIETSSTPSPTTIALSPPHEGVPFPPIAQGNAPPPLRSSPPQAEHGTLAPNIVNGNANQSHSEEPVSPSPATTPAINLPKISPASQPTNNGSFPPQESTNKGHNPEPVTPESAASPPWKAEHNQPPPPPEAHLISPSILPAPVASPPSSFPVNPPLFHPIIPSTLPAPVASPKSSPSGSFNWKNGGAPPIAVPLYKSPKPLPAVVHSPAQAPAAHKARQIDHAPEPKIPNNEKHTPELPPSASSHEHHHWNTTTSSSAPPLPSPYMVSPLTSNHQDKAIPPSLQPESGKRHHVSPPIMNQSSSIPSFSSPTHSPMTQVSSAPSPSMEFAPHPTEIQAPFLPPRVSPSPPKTPTLPRVQALPPPPPNEECSSTVCLEPYTNSPPGEPCRCVWPMRVGLRLSVSLYTFFPLVSELASEIATGVFMKQSQVRIMGANADEQPEKTVVLIDLVPLGEIFDSTTALFTSTRFWHKKIAIKASYFGDYDVLYVSYPGLAPSPPLPPSTISIIDGGPYSNNGGTIKPLGVDIQKRQHKSGLSRGIVAIITVSVFLALVLCAAAAAAWVMLKYGDHVTQPASTPRISQPSLTKPPGNAASLVGGGGVGSASTSFRSSIAAYTGSAKTFSANDIIKATDNFDGSRILGEGGFGLVYGGILEDGTKVAVKVIKREDHHGDREFLAEVEMLSRLHHRNLVKLIGICTEESVRCLIYELVPNGSVESHLHGIDRENSSLGWSARMKIALGAARGLAYLHEDSSPRVIHRDFKSSNILLEDDFTPKVSDFGLARTATDENNRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPPGQENLVAWARPLLASREGLEAIVDPCLGGDVAFESVAKVAAIASMCVQPEVSNRPFMGEVVQALKLVCNECEEAKEEGEGEGEGEGGSRRSTQDLDVRGSNVSEMELWGRVDVERGFSCSVRVGREEEESGSFRRHSYSGPLVTGRSRQLWHIMRRLSGGTVSEHSTLFKL 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271878g00005 1131 ProSitePatterns Protein kinases ATP-binding region signature. 757 779 IPR017441 GO:0005524
Stsc271878g00005 1131 MobiDBLite consensus disorder prediction 337 351 - -
Stsc271878g00005 1131 MobiDBLite consensus disorder prediction 116 133 - -
Stsc271878g00005 1131 MobiDBLite consensus disorder prediction 1035 1054 - -
Stsc271878g00005 1131 MobiDBLite consensus disorder prediction 168 225 - -
Stsc271878g00005 1131 FunFam receptor-like serine/threonine-protein kinase ALE2 724 826 - -
Stsc271878g00005 1131 ProSitePatterns Serine/Threonine protein kinases active-site signature. 873 885 IPR008271 GO:0004672|GO:0006468
Stsc271878g00005 1131 CDD STKc_IRAK 757 1025 - -
Stsc271878g00005 1131 MobiDBLite consensus disorder prediction 105 267 - -
Stsc271878g00005 1131 Pfam Protein tyrosine and serine/threonine kinase 755 1021 IPR001245 GO:0004672|GO:0006468
Stsc271878g00005 1131 Gene3D Transferase(Phosphotransferase) domain 1 827 1044 - -
Stsc271878g00005 1131 PANTHER OS01G0750732 PROTEIN 480 1048 - -
Stsc271878g00005 1131 MobiDBLite consensus disorder prediction 138 159 - -
Stsc271878g00005 1131 MobiDBLite consensus disorder prediction 322 455 - -
Stsc271878g00005 1131 ProSiteProfiles Protein kinase domain profile. 751 1027 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271878g00005 1131 MobiDBLite consensus disorder prediction 413 445 - -
Stsc271878g00005 1131 FunFam Receptor-like serine/threonine-protein kinase ALE2 827 1040 - -
Stsc271878g00005 1131 Gene3D Phosphorylase Kinase; domain 1 723 826 - -
Stsc271878g00005 1131 SUPERFAMILY Protein kinase-like (PK-like) 731 1024 IPR011009 -
Stsc271878g00005 1131 MobiDBLite consensus disorder prediction 239 267 - -
Stsc271878g00005 1131 MobiDBLite consensus disorder prediction 364 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271878g00005 Stsc-Chr271878 18061 23416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271878g00005 185 1127 Receptor kinase-like Gene Family AT5G56890 53.681 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Stsc271878g00005 PK_Tyr_Ser-Thr 2.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271878g00005 - - adu:107458134 1716.05