Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271878g00004 ATGCCTCCAAGAATTCTATTGTGCGGCGATGTTTTGGGGCGACTCAACCAGCTCTTCAAGCGCGTCTCCTCGGTCAACAAATCGGCGGGTCCATTCGACGCGCTATTGTGCGTCGGTCAATTCTTCCCGAACTCCCCGGAGCAGCTCGACGAGTTGACTGCATATGTCGAAGGTCGCTCACAAATTCCAATTCCTACTTACTTCATCGGCGACTACGGCGTCGGTGCCGCCAAAGTGTTGCTGGCGGCTTCCAAGGACTCCGCCAATCGTGGTTTCAAGATGGACGGTCTCAGAGTCTGCGATAACTTGTTCTGGTTGAAAGGCAGTGGCAATTTCTCCCTCTTTGGTTTGTCTGTGGCCTATTTATCTGGGAGAAAATCACCAGAAGGGCAACAGTTTGGGACCTACGGTCAAGATGATGTTGATGCTTTGCGAGCGATAGCCGAGGAGCCTGGGATTGTCGACTTGTTCTTGACTAATGAATGGCCAACTGGGGTGACAAATAGAGCAGATACTTCAGATATTCCTGCTGGATTCTCGGATTCCATAGGTAGCGATTCAACCATATCGGAGTTAGTACAAGAGATTAAACCACGCTACCATATCGCAGGCACTAAAGGTATATACTATGCCCGTGAACCATATTTCAATGTCGATGCTGTGCATGTGACTCGTTTCATAGGGCTTGCCTCTGTTGGAAATAAAGAGAAGCAGAAATTTATTCATGCACTTTCTCCCACTCCAGCATCTACCATGTCTTCAACTGAGATTGCCATGAAAACCACAAATAGCACCTTATCACCATACACACTGGTGGAAAAAGGTACTTCTCCGAAGGATGTTTCTAAGAGATCTGGTGAAGCCATTGCTGATGATCAATATTGGAGATATGATGTTTCTCAAAAGCGTCGAAGACATGATGCTGGAGATGGGGAAAAAATATGTTTCAAATTTGTATCTTCTGGTTCTTGTCCACGTGGAGAGAAGTGCAATTTTCGACATGATGGGGATGCAAGGGAACAGTATAAGAGAGGGGTTTGCTTTGATTTTTTGAATAAAGGAAAATGTGAAAGGGGTCCAGATTGCAGCTTTAAGCACAGTTTGCAGGATGAAGGCGATATGCCTCCTTCTAGACGGCCTGGATCTGAAAACACTAGATCAAAAGAATGTTGGTTTTGCTTGTCAAGCCCCAGTGTGGAGTCTCACTTGATCATAAGCATTGGGGAAAATTACTACTTGGCACTGGCTAAAGGTCCACTTGTTGAAGACCATGTGCTGATAGTACCAGTTGAGCATATGCCAAGTACCTTGTCTCTGTCATCTGAATCTGAAGTTGAGCTCTGTAGGTTTCAGAACAGTCTTAAGAAGTATTGCAAGAGCCAGGGAAAGGAAGTCATATTTTTTGAGTGGGCTTCCATACGTGGCACTCATGCAAATCTTCAGGCCATTCCTATTCCATCTTCCAGAGCAGTTATGGTTGAAAAGGCATTCAATTTAGCTGCACAAAAGATGGGATTTAAATTTTTGTCCAAGAATTCATTTCTGATGGAAGAAAATTTCTAA 1563 0.4485 MPPRILLCGDVLGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPNSPEQLDELTAYVEGRSQIPIPTYFIGDYGVGAAKVLLAASKDSANRGFKMDGLRVCDNLFWLKGSGNFSLFGLSVAYLSGRKSPEGQQFGTYGQDDVDALRAIAEEPGIVDLFLTNEWPTGVTNRADTSDIPAGFSDSIGSDSTISELVQEIKPRYHIAGTKGIYYAREPYFNVDAVHVTRFIGLASVGNKEKQKFIHALSPTPASTMSSTEIAMKTTNSTLSPYTLVEKGTSPKDVSKRSGEAIADDQYWRYDVSQKRRRHDAGDGEKICFKFVSSGSCPRGEKCNFRHDGDAREQYKRGVCFDFLNKGKCERGPDCSFKHSLQDEGDMPPSRRPGSENTRSKECWFCLSSPSVESHLIISIGENYYLALAKGPLVEDHVLIVPVEHMPSTLSLSSESEVELCRFQNSLKKYCKSQGKEVIFFEWASIRGTHANLQAIPIPSSRAVMVEKAFNLAAQKMGFKFLSKNSFLMEENF 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271878g00004 520 Gene3D - 307 379 - -
Stsc271878g00004 520 SUPERFAMILY CCCH zinc finger 341 370 IPR036855 GO:0046872
Stsc271878g00004 520 Gene3D - 384 505 IPR036265 -
Stsc271878g00004 520 ProSiteProfiles Zinc finger C3H1-type profile. 309 337 IPR000571 GO:0046872
Stsc271878g00004 520 SUPERFAMILY CCCH zinc finger 308 335 IPR036855 GO:0046872
Stsc271878g00004 520 CDD MPP_CWF19_N 6 232 - -
Stsc271878g00004 520 SUPERFAMILY HIT-like 387 460 IPR036265 -
Stsc271878g00004 520 SMART c3hfinal6 309 336 IPR000571 GO:0046872
Stsc271878g00004 520 SMART c3hfinal6 343 368 IPR000571 GO:0046872
Stsc271878g00004 520 ProSiteProfiles Zinc finger C3H1-type profile. 341 369 IPR000571 GO:0046872
Stsc271878g00004 520 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 4 510 IPR040194 -
Stsc271878g00004 520 Pfam Protein similar to CwfJ C-terminus 1 384 497 IPR006768 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271878g00004 Stsc-Chr271878 10874 15584 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc271878g00004 CwfJ_C_1 1.1e-37 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271878g00004 K24939 - gmx:100782106 879.396