Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271877g00043 ATGGCTGGCACTCCACCATCAGAAGAAACAAATGGAGGTAACAATAACAATGAAGTGCTTATGAACATAGACAACGACACAATAATAAGCAATAAGCAAGACTCATCGTCATCATCACAACCAACCTCAATCCCTGTCTCTTTCTTGCAGAAGTTAGTAGCTGAAGTGGTGGGGACATATTTCTTGATATTTGCTGGGTGTGCTGCTGTGGTTGTGAACAAGAACAAGGACAATGTGGTAACACTTCCTGGGATTTCAATTGTTTGGGGATTGGCGGTTACAGTACTCGTCTATTCCACTGGTCACATCTCTGGTGCCCATTTCAACCCTGCTGTTACCATTGCTTTTGCTACTACTAGAAGGTTCCCCTTGAAGCAGGTACCGGCTTATGTAGCAGCACAGGTCATTGGATCTACACTTGCAAGTGGAACCCTCAGATTATTGTTCACCGGCAAGGAAAACCAATTTGCAGGAACACTCGCAGCTGGCTCTGAGTTACAAGCTTTTGTGCTCGAATTCATAATCACTTTTTATCTTATGTTCATCATATCTGGGGTTGCAACCGATAGCAGAGCGGTAGGTGAGTTGGCAGGGCTTGCAGTTGGCTCAACGGTACTGCTGAATGTGATGTTTGCAGGGGCAATAACAGGGGCATCAATGAACCCAGCAAGGAGCATAGGACCTGCAATAATTCACAGTGAATACAGAGGAATATGGATATACTTAACATCTCCAATTCTGGGTGCTATTGCTGGTGCTTGGGTTTACAACGCTCTAAGGCACACAGCCCCTTCTCCTTCTCTTAGAACCACGGCTTCTTTCGTCAAACAACCACCTACTGATTAG 846 0.4515 MAGTPPSEETNGGNNNNEVLMNIDNDTIISNKQDSSSSSQPTSIPVSFLQKLVAEVVGTYFLIFAGCAAVVVNKNKDNVVTLPGISIVWGLAVTVLVYSTGHISGAHFNPAVTIAFATTRRFPLKQVPAYVAAQVIGSTLASGTLRLLFTGKENQFAGTLAAGSELQAFVLEFIITFYLMFIISGVATDSRAVGELAGLAVGSTVLLNVMFAGAITGASMNPARSIGPAIIHSEYRGIWIYLTSPILGAIAGAWVYNALRHTAPSPSLRTTASFVKQPPTD 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271877g00043 281 Gene3D Glycerol uptake facilitator protein. 8 266 IPR023271 -
Stsc271877g00043 281 PRINTS Major intrinsic protein family signature 50 69 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271877g00043 281 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271877g00043 281 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271877g00043 281 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271877g00043 281 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271877g00043 281 PRINTS Major intrinsic protein family signature 239 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271877g00043 281 CDD MIP 50 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271877g00043 281 Pfam Major intrinsic protein 46 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271877g00043 281 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Stsc271877g00043 281 NCBIfam MIP family channel protein 54 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271877g00043 281 SUPERFAMILY Aquaporin-like 45 262 IPR023271 -
Stsc271877g00043 281 PANTHER AQUAPORIN NIP2-1 30 263 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271877g00043 Stsc-Chr271877 260318 261973 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271877g00043 10 276 Major Intrinsic Protein MIP AT5G37820 51.852 8.86e-93 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271877g00043 K09874 - gmx:100798526 374.785