Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271877g00042 ATGGCTGGGACTGGGACTCTATCATCAGAAGAAACAAAAGGAGGTAACAATAACAATGAAGTGCTTATGAACATAGACAACGACACAATAATAAGCAATAAGCAAGACTCATCATCATCACAAACAACCTCTATCCCTGTCTCTTTTTTGCAGAAGTTAGTAGCTGAAGTGGTGGGGACATATTTCTTGATATTTGCTGGGTGTGCTGCTGTGGTTGTGAACAAGAATCACGACAATGTGGTAACACTTCCTGGGATTTCAATTGTTTGGGGATTGGCTGTTACGGTACTCGTCTATTCCACTGGTCACATCTCTGGTGCCCATTTCAACCCTGCTGTTACCATCGCTTTTGCTACTACTAGAAGGTTTCCCTTCAAGCAGTGGATATACTTAACATCTCCAATTCTGGGGGCTATTACTGGTGCTTGGGTTTACAACGCTCTAAGGCACACTGCACCTTCTCCTTCTCTTAGAACCACCGCTTCTTTCATCAAATAA 498 0.4297 MAGTGTLSSEETKGGNNNNEVLMNIDNDTIISNKQDSSSSQTTSIPVSFLQKLVAEVVGTYFLIFAGCAAVVVNKNHDNVVTLPGISIVWGLAVTVLVYSTGHISGAHFNPAVTIAFATTRRFPFKQWIYLTSPILGAITGAWVYNALRHTAPSPSLRTTASFIK 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271877g00042 165 ProSitePatterns MIP family signature. 108 116 IPR022357 -
Stsc271877g00042 165 PRINTS Major intrinsic protein family signature 90 114 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271877g00042 165 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271877g00042 165 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271877g00042 165 Pfam Major intrinsic protein 47 147 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271877g00042 165 Gene3D Glycerol uptake facilitator protein. 44 161 IPR023271 -
Stsc271877g00042 165 SUPERFAMILY Aquaporin-like 46 126 IPR023271 -
Stsc271877g00042 165 PANTHER AQUAPORIN NIP2-1 127 152 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271877g00042 Stsc-Chr271877 256606 257357 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271877g00042 33 142 Major Intrinsic Protein MIP AT4G18910 67.568 4.69e-45 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271877g00042 K09874 - gmx:100794883 156.377