Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271877g00040 ATGGGTGAATATTCATCAAAAAGCGGTGATGTTACTATATCTGTAACTAGCAAGGAGGATGCAGCAGCAGGAGGAGGTGGATCCTGCAAAACAACTCAAGGAGGATCATGCAAATATTTTCTTCTCTTCCAAAAGATGGTGGCAGAATTGGTGGGGACGTATTTCTTGATATTTACAGGGTGCGCAGCCATTGCTGCCAACAACGACTACGGGAAGCAGGTAACGCTTCTTGGGATTGCAACTGTATGGGGGTTGGTAGTTATGATCATCGTCTACACAATTGGTCATGTCTCTGGGGCCCACCTCAACCCCGCCGTCACCATTGCTTTCGCTTCCATCAGAAAGTTTCCACTCGCTCAGGTGCCCGCTTATATAGCAGCTGAAGTTCTTGGAGGAATCCTAGGAAGCGGAACAGTCAGACTCATTTTCAGTGGTAACAATCTGCATGTTCAGTTCACAGGAACCTTGCCAACTGGATCAAACCTCCAATCCTTCATCATTGAATTCATAATCACCTTTTTCCTTATGTTTGTCATTTGCGGGGTTGCTACCGATAACAGAGCGGTTGGTACCTTGGCTGGAGTTGCAATAGGGTCTACCGTACTGCTTAATGTGCTTATTGCAGCGCAAGTGTCAGGAGCATCAATGAACCCAGCAAGAAGTCTAGGACCAGCATTTGTGCACCATGAATATAGAGGAATCTGGATATACATGGTGGCACCCACCATTGGAGCTGTGACCGGTGCATGGGTTTACAACATACTCAGAGACAACAACCACAAGCCAACAATCACCAAGAATGCCTCTTTCAACTGA 816 0.4657 MGEYSSKSGDVTISVTSKEDAAAGGGGSCKTTQGGSCKYFLLFQKMVAELVGTYFLIFTGCAAIAANNDYGKQVTLLGIATVWGLVVMIIVYTIGHVSGAHLNPAVTIAFASIRKFPLAQVPAYIAAEVLGGILGSGTVRLIFSGNNLHVQFTGTLPTGSNLQSFIIEFIITFFLMFVICGVATDNRAVGTLAGVAIGSTVLLNVLIAAQVSGASMNPARSLGPAFVHHEYRGIWIYMVAPTIGAVTGAWVYNILRDNNHKPTITKNASFN 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271877g00040 271 CDD MIP 44 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271877g00040 271 ProSitePatterns MIP family signature. 101 109 IPR022357 -
Stsc271877g00040 271 Pfam Major intrinsic protein 42 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271877g00040 271 SUPERFAMILY Aquaporin-like 39 261 IPR023271 -
Stsc271877g00040 271 PANTHER AQUAPORIN NIP2-1 40 268 IPR034294 -
Stsc271877g00040 271 Gene3D Glycerol uptake facilitator protein. 20 267 IPR023271 -
Stsc271877g00040 271 NCBIfam MIP family channel protein 48 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271877g00040 271 PRINTS Major intrinsic protein family signature 83 107 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271877g00040 271 PRINTS Major intrinsic protein family signature 235 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271877g00040 271 PRINTS Major intrinsic protein family signature 44 63 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271877g00040 271 PRINTS Major intrinsic protein family signature 120 139 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271877g00040 271 PRINTS Major intrinsic protein family signature 198 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271877g00040 271 PRINTS Major intrinsic protein family signature 167 185 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271877g00040 Stsc-Chr271877 242198 244285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271877g00040 27 270 Major Intrinsic Protein MIP AT5G37820 51.779 2.02e-86 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271877g00040 K09874 - gmx:547904 325.479