Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271877g00039 ATGGATGAAGCTCAGAGCAGTTCCAATTCCCTGCCACCTTTTCTGGTAAAGACTTATGAGATGGTGGATGATCCTTCCACTGATCCCATTGTTTCTTGGAGTGCCTCTAATAGAAGTTTCATTGTGTGGAATCCTCCGGATTTCGCTAGGGATTTGCTTCCGAGATTCTTCAAGCATAATAATTTCTCAAGCTTTATCAGGCAGCTGAACACTTACGGTTTTAAGAAGATTGACCCTGAACAATGGGAATTTGCAAATGATGATTTTGTAAGAGGTCAACCACATCTTATGAAGAATATCCACAGGCGAAAACCGGTTCATAGTCATTCTTTACAGAATCTTCAGGCGCAAGCGCCGCTCACAGATTCAGAAAGGAAGAGTTTACAAGATGAAATAGAGAGGCTTAACCGTGACAAAGAACAACTTCTTATGGAGCTACAGAGACATGAACAGGAGTGGCAAGCATATGAGATGCGAATACATTGCTCGAAAGACCGTGTGGAGAAGTTGGAGGAAAAGCATCAGAAGATGATCTCTTCTGTTTCCAGTGTACTGCAGAAACCTGGAATTGACTTGAATCAATTGGCATTGCTAGAAACCGCAGATAGAAAACGAAGGTTGCCAAGAAGTGGCTATCTTAGTGATGAAGCTAACATTGAAGAAACAACTGAGACTGACCAAATGTTACCCAGAGAAAATTCACAGGACACCTCCGTTTTCTCAAAAATCACGGAGCGGTTGGATCAGCTTGAGTCATCAATGGTGTTTTGGGAAACCATTTCAAATGATGTTTGTGAAGCGCCCATTCACATTCATTCGAGCTTGGATCTTGATGAATCCACAAGTTGTGCCGATAGTCTGTCTATATCTTGTCCCCTACTAGATGTTGATGTTCCGCCTAAGTCATCTGGAATTGACATGAACGCTGAGCCTGCTTCTGCTCCTGTTTCCGAGCCTGCTGCCACAACAAAAGAACAACCTACCGGCACAACCGCTGTGGCGGCTGGTGTTAATGATGTATTTTGGGAACAATTTTTGACGGAGAATCCTGGTTCATCAGAAGCACAGGAAGTGCAATCAGAAAGAAAGCATCATGACAGCAAGGGTGAAGGAAAACCTAGTGACCCAGGAAAGTTTTGGTGGAACATTCGAAACACAAGTAATCTTCCAGAACAAATGGGTCATGTTAGTCAAGCGGAGAAAACTTAG 1209 0.4318 MDEAQSSSNSLPPFLVKTYEMVDDPSTDPIVSWSASNRSFIVWNPPDFARDLLPRFFKHNNFSSFIRQLNTYGFKKIDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQAQAPLTDSERKSLQDEIERLNRDKEQLLMELQRHEQEWQAYEMRIHCSKDRVEKLEEKHQKMISSVSSVLQKPGIDLNQLALLETADRKRRLPRSGYLSDEANIEETTETDQMLPRENSQDTSVFSKITERLDQLESSMVFWETISNDVCEAPIHIHSSLDLDESTSCADSLSISCPLLDVDVPPKSSGIDMNAEPASAPVSEPAATTKEQPTGTTAVAAGVNDVFWEQFLTENPGSSEAQEVQSERKHHDSKGEGKPSDPGKFWWNIRNTSNLPEQMGHVSQAEKT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271877g00039 402 MobiDBLite consensus disorder prediction 380 402 - -
Stsc271877g00039 402 MobiDBLite consensus disorder prediction 348 402 - -
Stsc271877g00039 402 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Stsc271877g00039 402 MobiDBLite consensus disorder prediction 302 327 - -
Stsc271877g00039 402 FunFam Heat shock transcription factor 1 7 104 - -
Stsc271877g00039 402 Gene3D - 6 104 IPR036388 -
Stsc271877g00039 402 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc271877g00039 402 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc271877g00039 402 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc271877g00039 402 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc271877g00039 402 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 309 IPR027725 -
Stsc271877g00039 402 MobiDBLite consensus disorder prediction 357 373 - -
Stsc271877g00039 402 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc271877g00039 402 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc271877g00039 402 Coils Coil 111 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271877g00039 Stsc-Chr271877 231208 234253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271877g00039 7 402 HSF AT4G18880 52.826 5.62e-127 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc271877g00039 HSF_DNA-bind 1.1e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271877g00039 K09419 - gmx:100817602 598.201