Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271877g00038 ATGAAGTGGGGTGGCAGAAAATCATCTCCAGCTTCTTCTTCTTCTTCTAGTAGTATTAGTAATAATACTAATACTAAGCATTCTTTCATGTCTCAAGTGTCTCCTCTTTCATGGCTGTCCAAGTTCAAGCAGATGAGGATCAACTCGGAGCGAAAGCCGGGGCTGAATGCAAAGCAGAATTCTGTTCCATCTTTTGGTTCACCACCAAAGGATGCATGTGGGAATAGAGGAAGGTTTTATGGAGGAGAAGATGATGCCTTTTGGAGACTCTCATTTGGTGAAGAGAGCCATGAGTATAACAAGAGTAGTGAAGATATCATGAAACCAGCACTGCACAATTTGGATGGTGATCATGGCAATGATGTAATTCAGTCCTCAGCACAATTTGGACTGACTGATAAAAGATATGGAAGAAGAGATGCTACTCTGAGGTTCAAGCAGAAGGATATTGGAATGGGAGAGGGAAAAAAGTTTGCAAGTGAGAAAAAGACTTCTCTGCCATCAAATGATGAATGTGATCATGGAGGAAAAGAATTTGAATCCTTAAGGAGGAGATATGAGAGGAAAGCACAAAAGGTTTTACAAGATCAACTCTTGAAACTAGGAAGAGCTGCAGATAATGTTGAAGCTGAGTTTGCACCTAGAAACTCTAAGTCCTTAGAAAATGATGTTCTGAAATCCGAATCGCCTAGAACGATTCGAACGCCAAGAACAAATTCACACATCTCCGCGGTACATTCAAAGAATTCTGGCCTTGGAAGTCTTAAAGAAGATGATGTTAACTCTGAGAAGAATGCTGAAAAGTTGAGAGTGAAGGTTAACAAGAAAAGGCAATCACTTCATGTGAGCAGAGAATTGCAGAGGAGGAAATCAAGGAATAGTCCAAGGGTAAGAGTGCATTCTCCAAGGATGGCTTCCAAGATGGAAATATGCAAAATAAAGGCCATAGAAGACATTAAGAAAGCAAAACTAAAGATGAAGAAGGAGGAGGAAATTTCAGAGGAAACAGCAGATGTGGACAGCTTTGCTGTGGTGAAATGCTCATTGGATCCGCAACAAGACTTCAGAGATTCGATGATGGAGATGATCATGGAGAGGAAGATCAGTAGGCCAGAAGAAATGGAGGAGCTGCTGGCATGCTATCTCACACTGAATTCTAGTGAGTATCATGATATCATCATCAAGGTTTTCAGGGAGGTATGGTTATATCTGAACAAGGTTTGTTTAGGTCTTAAATCAAAGAAGCAATGCAGTTTCAATGATTAA 1266 0.4052 MKWGGRKSSPASSSSSSSISNNTNTKHSFMSQVSPLSWLSKFKQMRINSERKPGLNAKQNSVPSFGSPPKDACGNRGRFYGGEDDAFWRLSFGEESHEYNKSSEDIMKPALHNLDGDHGNDVIQSSAQFGLTDKRYGRRDATLRFKQKDIGMGEGKKFASEKKTSLPSNDECDHGGKEFESLRRRYERKAQKVLQDQLLKLGRAADNVEAEFAPRNSKSLENDVLKSESPRTIRTPRTNSHISAVHSKNSGLGSLKEDDVNSEKNAEKLRVKVNKKRQSLHVSRELQRRKSRNSPRVRVHSPRMASKMEICKIKAIEDIKKAKLKMKKEEEISEETADVDSFAVVKCSLDPQQDFRDSMMEMIMERKISRPEEMEELLACYLTLNSSEYHDIIIKVFREVWLYLNKVCLGLKSKKQCSFND 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271877g00038 421 MobiDBLite consensus disorder prediction 7 32 - -
Stsc271877g00038 421 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 210 404 IPR038933 GO:0045892
Stsc271877g00038 421 NCBIfam uncharacterized plant-specific domain TIGR01568 343 405 IPR006458 -
Stsc271877g00038 421 MobiDBLite consensus disorder prediction 1 32 - -
Stsc271877g00038 421 Pfam Transcriptional repressor, ovate 348 404 IPR006458 -
Stsc271877g00038 421 MobiDBLite consensus disorder prediction 148 176 - -
Stsc271877g00038 421 MobiDBLite consensus disorder prediction 219 302 - -
Stsc271877g00038 421 ProSiteProfiles OVATE domain profile. 344 403 IPR006458 -
Stsc271877g00038 421 MobiDBLite consensus disorder prediction 49 76 - -
Stsc271877g00038 421 MobiDBLite consensus disorder prediction 257 292 - -
Stsc271877g00038 421 MobiDBLite consensus disorder prediction 231 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271877g00038 Stsc-Chr271877 228342 229607 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Stsc271877g00038 Ovate 1.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271877g00038 - - ahf:112792751 606.29