Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271877g00034 ATGGCTTCTGGTGTTATATTCTCGTCGTTGCGGCGGCGTCGGTCTCCGTCGCTGGAGGCCTTCCTGGCGCCGGTGGACCTTTCCGACACGGCGCTCGTCCGGACCGTCGTCGCTGTCGCCAGCGACTTAGTCACGGGCTTCTCCGATCACCGGTTCCCCTTCCAGCGCAAGAACTCTCGCTCCTTAATCCGAAAGGTCGAGGTTTTTCAGCTCCTGTTAGAGTCACTGAGAGATTCAAGTGTGATGAGTCTTCCCTCCAAGGCGGCGCTCTGCTTGAGGGAGCTATATTTGCTGGTGTATCGTTCCAAGATTCTCTTTGATTACTGCGCGCAATCGAGTAAGTTGTGGCTGTTGCTTCAAAACCATTCAATTTCTGGTCATTTCCATGATTTGGGTCAAGAATTTTCGACCCTTTTGGATGTTTTCCCTGTTAGGGCCGTTGACCTTAGCGATGATGTTAGGGAGCAGGTTGAGTTGTTGAGGAGACNNNNNNNNNNAGATAAGAGGGATGATGGCCTTAGGATAAAGTTCTTTTCTTTTCTCGATGCATTTGAGAATGGGAGGATTCCTTGTGCTGATGAATTGAGGCTTTTCTATGTTGATGAGTTGAAAATTAGTGATGCTAAGAGTTGTAGGGCTGAAATTGAAGCTTTGGAAGAGCAGATTGTTAATCGTGAGGGTGATATTGAGCCAACTGTTTCTGTGCTTAATGGACTAGTAGCAATGACACGGTATAGCAGGTTTTTGCTCTTTGGCTTTGAGGAAGAAGATGATGATTTTGGATTGGGGAATGAGACTCAGAAGAAGGCCAAGGTGAGGTTGGGTAATCAAGATATAGCGGACAAGATTTTGACCCTTCCTAAGGACTTTTGCTGTCCGATATCATTGGATTTGATGCGTGATCCGGTGATAATATCAACAGGGCAGACTTATGATCGGAGTTCCATATCTAGGTGGATGGATGAAGGGCATTGTAGCTGTCCAAAAACAGGTCAAACACTTGCACACAACCGGCTTGTTCCTAATCGTGCGCTTAGGAATTTGATCGTGCAGTGGTGCAGTGCAAATGGAATACCCTATGATCCACCAGAGGTAATTGATCCATCTGCTGAAACTTTTGCGTCGGCTTGTCCCACAAACGCTACCATTGAAGCCAACAAAGCAACTGTGGCGCTTCTCATTCAGCAGCTAGCTAATGGATCACAAGCTGGAAGGACTGTAGCTGCAAGGGAGATAAGATTGCTTGCAAAAACTGGAAAAGAGAACCGTGCCTTCATCGGAGAGGCAGGGGCAATTCCTTATCTTCGGGATTTACTTTCTTCTCCTAACAGCGTTGCACAGGAGAACTCAGTAACTGCATTGCTCAACCTATCCATTTTTGACAGAAACAAAAGTCGCATCATGGATGAGGCAGGGTGCTTGGGATCAATAGTTGATGTGTTGAGATTTGGACAAACAACTGAGGCGAGGGAAAATGCTGCTGCAACATTGTTCAGTCTCTCTGCTGTTCATGACTATAAAAAAAGAATTGCAGATAATGTGGGAGCCGTTGAAGCACTGGCAAGTCTGTTGCAAGAGGGGACCCCAAGGGGAAAGAAGGATGCCGTAACAGCATTGTTTAACCTTTCCACCCACACTGACAACTGCGTGAGGATGATAGCGGCAGGAGCAGTAACGGGTTTAGTTGAGGCATTGGTGATTGAAGGAATTGCTGAGGAAGCAGCAGGTGCATTGGCCTTGATTGTCCGGCAGCCACTTGGGGCAAAAGCTGTTGTGAGTGAGCAAACAGCAGTGGCTGGATTGATAGGAATGATGCGTTGCGGAACACCAAGAGGTAAAGAGAATGCAGTTGCCGCATTGCTGGAATTGTGCCGCAGTGGTGGCACAGCAGCAACTGAAAGGGTGGTTAGGGTGCCGGCTTTGGCAGGGTTACTTCAAACCCTGCTCTTCACAGGAACAAAACGAGCAAGACGAAAAGCAGCTTCACTTGCAAGAGTGTTTCAGAGATGTGAGAATGCCTCCCTACATTATGGAGGATTGGGCCTAGGGTATGCATTTGCTAGCAATTCAACACCAACAAGGGATACAACAAGCTTTGCTGGTGATGTTTCAGTACCAATGTCCATTTCTGTACCTGTATTGTAG 2145 0.4727 MASGVIFSSLRRRRSPSLEAFLAPVDLSDTALVRTVVAVASDLVTGFSDHRFPFQRKNSRSLIRKVEVFQLLLESLRDSSVMSLPSKAALCLRELYLLVYRSKILFDYCAQSSKLWLLLQNHSISGHFHDLGQEFSTLLDVFPVRAVDLSDDVREQVELLRRXXXXDKRDDGLRIKFFSFLDAFENGRIPCADELRLFYVDELKISDAKSCRAEIEALEEQIVNREGDIEPTVSVLNGLVAMTRYSRFLLFGFEEEDDDFGLGNETQKKAKVRLGNQDIADKILTLPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMDEGHCSCPKTGQTLAHNRLVPNRALRNLIVQWCSANGIPYDPPEVIDPSAETFASACPTNATIEANKATVALLIQQLANGSQAGRTVAAREIRLLAKTGKENRAFIGEAGAIPYLRDLLSSPNSVAQENSVTALLNLSIFDRNKSRIMDEAGCLGSIVDVLRFGQTTEARENAAATLFSLSAVHDYKKRIADNVGAVEALASLLQEGTPRGKKDAVTALFNLSTHTDNCVRMIAAGAVTGLVEALVIEGIAEEAAGALALIVRQPLGAKAVVSEQTAVAGLIGMMRCGTPRGKENAVAALLELCRSGGTAATERVVRVPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGLGYAFASNSTPTRDTTSFAGDVSVPMSISVPVL 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271877g00034 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 360 IPR013083 -
Stsc271877g00034 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 430 472 IPR000225 GO:0005515
Stsc271877g00034 714 Pfam Armadillo/beta-catenin-like repeat 420 458 IPR000225 GO:0005515
Stsc271877g00034 714 Pfam U-box domain 287 356 IPR003613 GO:0004842|GO:0016567
Stsc271877g00034 714 FunFam RING-type E3 ubiquitin transferase 362 684 - -
Stsc271877g00034 714 PANTHER U BOX DOMAIN-CONTAINING 57 670 - -
Stsc271877g00034 714 Gene3D - 387 665 IPR011989 -
Stsc271877g00034 714 ProSiteProfiles U-box domain profile. 285 359 IPR003613 GO:0004842|GO:0016567
Stsc271877g00034 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 515 557 IPR000225 GO:0005515
Stsc271877g00034 714 CDD RING-Ubox_PUB 287 339 IPR045210 -
Stsc271877g00034 714 SUPERFAMILY RING/U-box 275 360 - -
Stsc271877g00034 714 Coils Coil 208 228 - -
Stsc271877g00034 714 FunFam RING-type E3 ubiquitin transferase 285 360 - -
Stsc271877g00034 714 SMART arm_5 419 459 IPR000225 GO:0005515
Stsc271877g00034 714 SMART arm_5 461 502 IPR000225 GO:0005515
Stsc271877g00034 714 SMART arm_5 545 583 IPR000225 GO:0005515
Stsc271877g00034 714 SMART arm_5 584 625 IPR000225 GO:0005515
Stsc271877g00034 714 SMART arm_5 504 544 IPR000225 GO:0005515
Stsc271877g00034 714 SMART Ubox_2 289 352 IPR003613 GO:0004842|GO:0016567
Stsc271877g00034 714 SUPERFAMILY ARM repeat 386 667 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271877g00034 Stsc-Chr271877 194407 197059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271877g00034 1 714 U-box Gene Family AT1G29340 66.576 0.0 886
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271877g00034 - - gmx:100811153 1067.76