Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271877g00022 ATGGACAGTAATAAGCTGAGAAACAGGAGCAGTAGGAGTAGTGGCAGTAGCAGAAATCTGTATATGAAGGAACAAGAAGACAATGATGGTGGCTCTCAGTCTCAACAAGAAAACATCGTCGATTCTCCTCCTTCTTCAAATAATTCCACCCTCTTCAACATTGATGGCTTGGTTACTACTTCTTCCTCACCATCATCATCTTCAAGTAAGAGAAGGAGAGGGATAGAGAAAAGGGTAGTGCATATAAGAATAAAGGAGGGAGGAGAAGGGCCGAGGCTAAAAGGGGAAAACAACACAGCGCCACCGTCAGATTCATGGGCATGGAGGAAGTACGGGCAGAAACCGATAAAAGGTTCGCCGTACCCGAGAGGGTACTACAGATGCAGCAGCTCGAAGGGGTGTCCGGCGAGAAAACAAGTTGAGAGAAGTAGACTGGATCCCACCATGCTGGTAGTTACATATTCATGCGAACACAACCATCCATGGCCTCCTTCACGCAACCACAACAACACTAATAGATCGTCTAACAAGAAGCCTCAACAACCCTGCGAGGAGTTAGTTGCGGACCCGGTTGAACCGGAGGAGGACAATAAATTTCCGGATCTTGAGGGCCATGACTCTATCATTCACGACCTTGGCTGGTTCCGCGACATCTCGACCTCATCGACCGCCGTACTCCACAGCCCTATATTCTCTGGCTATGATGCCGACGTGGGGGCGGCGTCGGTGCTGGTTCCCATGGGGGAGGAGGAGGACGACTCGCTCTTTGCGGACCTCGGGGAGCTTCCCGAGTGCAACCTTGTGTTCCGGAGGGGGATGATGGAGACGGAGGAGCAACGGCGGCGCTATGCGGAGCCCTGGTGCGGGACCACAAGTTGA 879 0.5199 MDSNKLRNRSSRSSGSSRNLYMKEQEDNDGGSQSQQENIVDSPPSSNNSTLFNIDGLVTTSSSPSSSSSKRRRGIEKRVVHIRIKEGGEGPRLKGENNTAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRLDPTMLVVTYSCEHNHPWPPSRNHNNTNRSSNKKPQQPCEELVADPVEPEEDNKFPDLEGHDSIIHDLGWFRDISTSSTAVLHSPIFSGYDADVGAASVLVPMGEEEDDSLFADLGELPECNLVFRRGMMETEEQRRRYAEPWCGTTS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271877g00022 292 SUPERFAMILY WRKY DNA-binding domain 99 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc271877g00022 292 Pfam WRKY DNA -binding domain 104 161 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc271877g00022 292 MobiDBLite consensus disorder prediction 160 181 - -
Stsc271877g00022 292 MobiDBLite consensus disorder prediction 8 69 - -
Stsc271877g00022 292 ProSiteProfiles WRKY domain profile. 97 163 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc271877g00022 292 FunFam WRKY transcription factor 65 91 163 - -
Stsc271877g00022 292 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 17 267 IPR044810 GO:0003700
Stsc271877g00022 292 MobiDBLite consensus disorder prediction 158 186 - -
Stsc271877g00022 292 Gene3D WRKY domain 91 164 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc271877g00022 292 MobiDBLite consensus disorder prediction 1 110 - -
Stsc271877g00022 292 SMART WRKY_cls 102 162 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271877g00022 Stsc-Chr271877 141343 143063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271877g00022 32 270 WRKY Transcription Factor Family AT1G29280 52.632 8.97e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc271877g00022 WRKY 3.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271877g00022 - - ahf:112734976 395.586