Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271877g00013 ATGGATCAGGCAAGAAGCCAAGACAGTGCTGAGATGTTGGATAATGTGGATGAAGGAGTTGCAACTGATGCAGGAGATGGTAGTGGATTGGTTGAGAGAGATAATGTAGTTGGAGACAATGGAACTTCAGAAGAGATTTCCACTGATCTGGCTTTAAATAAGGAGGAGGAGGAGGAGCTTCGAGGGGTTAAGGATCAGGAAATGTCTGACTCGCCAAAAACCAGCGATACATTGTGCAGGGTTGAGCAAGGAACTAGTTACAGTTCAAGAAATTTGGTCAGTGGGGAGGTTGTACTTGAGACCTGTGTTGTAATAGATCCTCCCACTCAGGTCGAGCATGTCCATGGGAAATCGAAAGCAAAAGCCAACGAATCAGGGTTGAGCAAGCTGACCTTGAAAGCACCAAAGGCAGTGCCTGAGACAGATAAAAATTCATGTGCAATTGACATAAACAAAGAGTTTAGTGAGAACTTGGAAGGTGAAATGATTTGTAGGATTTGTCATCTGGCTTCAGGGCAACCAATAGAAGCAACGGTGGTTGGGACTGCTAACAATGAAACAAGTACAGATTTGATTCAACTTGGTTGCGCATGTAAGGATGAGCTAGGCATTGCACACAGTCATTGTGCTGAGGCATGGTTCAAGCTTAAAGGAAGCAGGTTGTGTGAAATATGTGGTGAGACTGCAAAAAATGTTTCACTATCACAGGTTGTCAATAATTCATTTATTGAAGAGTGGGACGAAAGTAGGTTCATGTATGGTGATAATAGTACCTCAACCAGCTTCTTTGGAAGATGCTGGCGTGGACAGCCATTCTGTAACTTCTTGATGGCATGCTTGGTAATAGCTTTCGTTCTACCGTGGTTCTTCCGTGTAAATATGTTCTAG 888 0.4347 MDQARSQDSAEMLDNVDEGVATDAGDGSGLVERDNVVGDNGTSEEISTDLALNKEEEEELRGVKDQEMSDSPKTSDTLCRVEQGTSYSSRNLVSGEVVLETCVVIDPPTQVEHVHGKSKAKANESGLSKLTLKAPKAVPETDKNSCAIDINKEFSENLEGEMICRICHLASGQPIEATVVGTANNETSTDLIQLGCACKDELGIAHSHCAEAWFKLKGSRLCEICGETAKNVSLSQVVNNSFIEEWDESRFMYGDNSTSTSFFGRCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271877g00013 295 PANTHER ZINC FINGER, RING-CH-TYPE 60 295 - -
Stsc271877g00013 295 ProSiteProfiles Zinc finger RING-CH-type profile. 156 232 IPR011016 GO:0008270
Stsc271877g00013 295 SMART ringv_2 163 226 IPR011016 GO:0008270
Stsc271877g00013 295 SUPERFAMILY RING/U-box 161 228 - -
Stsc271877g00013 295 Pfam RING-variant domain 183 225 IPR011016 GO:0008270
Stsc271877g00013 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 237 IPR013083 -
Stsc271877g00013 295 MobiDBLite consensus disorder prediction 49 71 - -
Stsc271877g00013 295 MobiDBLite consensus disorder prediction 1 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271877g00013 Stsc-Chr271877 77236 79941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271877g00013 159 294 C3H Transcription Factor Family AT5G05830 39.855 2.36e-25 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271877g00013 - - gmx:100791129 387.111