Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271877g00009 ATGAAGCCTCTCTGCAGATTCTTAATAGTGTTAGTTATGGCACTATTTTCTGTGGTGGAATCTACGTCTATATATTCATGCAACACCGCCACCAGCAGTAGCGTAGAGCAGAGACTGGTAGCAAAGGCTTTCAAGTCTGTATCTGGCTTCAACGCTTCCTCTTCCTGGTTCCGAAAAGGAGTAGTCCTTTCCAACTGTTCATCTCCATCTCATGTCATCACCATCAAATTTCCATCCAAGAATCTCACCGGTACCATCTCATGGGGTTATCTCATCAACATCTCAAACCTCCACTTTCTTGATCTCTCAGGCAATTTCTTACAAGGCAATCTCCCAACCTGGCTTTTCTCATCAACCTCATCCTTACGTCACATCAACCTCTCCCACAACAGCTTCGGAGGTAGCATCTTCGCCGCCTCGTTTTGTTCCTCCATTGAAACACTCAACCTCTCCCACAACAGGTTCACCAACTACCACAACTCGTCTTTCTTCCCAAACCTTAAAATCCTTGACCTCTCTCACAACCACTTGAGCACACGCCTCCCTTCAGCCTTCACCAACCTCACCAACCTTCAATACCTTGACTTATCAAACAACAACCTCACCGGAACTTTCCCTTCCGATTTTCCTCCACTCAATAACAACCTCCGCTTCCTCAACATCTCCTTCAACCGCTTCAACTCGTCAACTCTTAGCCTCAAAAAGTTCATCAACAAATTTGGCAAAGCCGCGTTCATCCACGCTGGCAACAATTTCACCTACACCACAACTACTCCAACTCACAACAAACACCATTCCGCAACCTCACAAGCCATTCACACTAGACAAAAACACGAACACAAGACACCGATTATTATCGGGGTTTCGTGTGCTTCTTCGTTAGCTGTTATTGTGATCATATGGGTGCTGCTACGCATTATTGTTGGGAAGAAGAAGAAGAAGGAGCGTTGCAAGATGAAGAAATGGGCAATATCGAAAGCGGAGGACATGATGAACGGGGGCGTGGCGGTGGAGAAATCAGGGCCGTTCGCGTTCGAGACGGAGTCAGGGCGGACGTGGGTGGCTGATCTGAAGGAACCAAGTTCTGCTCCGTTAGTGATGTTCGAGAAGCCGTTGATGAAGCTCACCTTCAGAGACCTGATGGCTGCCACGTCACACTTCGGGAAAGACTCACTCCTGGCGGAAGGTAGGTGTGGGCCCCTCTACAGGGCTGTACTCCCCGGTGATCTTCACGTGGTAATCAAGGTACTGGAGCACGCCAGGGACGTTGATCCTCGCGACTCCGTTGAAATGTTGGTTGACCTCTCGAAGCTCAAACACCCGAACTTGCTGCCCCTCTCTGGCTACTGCATTGCAGGTAAGGAGAAGCTGGTACTGTACGAGTTTATGGGAAACGGCGATTTGGGGAGGTGGCTACACGAGCTTCCAACGGGGGACACCAACGTCGAGGACTGGACACGCGACACCTGGGAAATCCACGAGGGCTCATCGGAGATAATGGGCTGGCTAACACGTCACCGTATTGCGGTTGGGATAGCACGCGGACTCGCTTACCTTCACCACGCGGGTTCCAAGCCCCTCGTGCACGGTCACCTCGTCACCTCCAACATTTTACTCGCCGACGATTTCGAGCCGCGAATATCGGATTTCGGGCTGCGGGGAGACCCGGATCCGAATTGCGGGACCCAGGGTGACGTGTACTGCTTCGGGATGGTGCTGATGGAGATGTTGACGGGGAAGGGAGGGACGGAGGAAACGGTGGGCGCGGTGAGGAAGGCGGTGAGGGAAGGGGACGGGGTTAGGGTTCTGGATGAGAGGCTGGGAGTGGGCGGTGAGTGGGTTCGAGAGATGGTGGAGAGCCTCCGAGTGGCGTACCTTTGCACTGCTGAGTCGCCTTGTAAGAGGCCCACTATGAAGCAGGTTTTGGGCTTGCTCAAAGATATTACTCCAAATCCAAACTAA 1962 0.5173 MKPLCRFLIVLVMALFSVVESTSIYSCNTATSSSVEQRLVAKAFKSVSGFNASSSWFRKGVVLSNCSSPSHVITIKFPSKNLTGTISWGYLINISNLHFLDLSGNFLQGNLPTWLFSSTSSLRHINLSHNSFGGSIFAASFCSSIETLNLSHNRFTNYHNSSFFPNLKILDLSHNHLSTRLPSAFTNLTNLQYLDLSNNNLTGTFPSDFPPLNNNLRFLNISFNRFNSSTLSLKKFINKFGKAAFIHAGNNFTYTTTTPTHNKHHSATSQAIHTRQKHEHKTPIIIGVSCASSLAVIVIIWVLLRIIVGKKKKKERCKMKKWAISKAEDMMNGGVAVEKSGPFAFETESGRTWVADLKEPSSAPLVMFEKPLMKLTFRDLMAATSHFGKDSLLAEGRCGPLYRAVLPGDLHVVIKVLEHARDVDPRDSVEMLVDLSKLKHPNLLPLSGYCIAGKEKLVLYEFMGNGDLGRWLHELPTGDTNVEDWTRDTWEIHEGSSEIMGWLTRHRIAVGIARGLAYLHHAGSKPLVHGHLVTSNILLADDFEPRISDFGLRGDPDPNCGTQGDVYCFGMVLMEMLTGKGGTEETVGAVRKAVREGDGVRVLDERLGVGGEWVREMVESLRVAYLCTAESPCKRPTMKQVLGLLKDITPNPN 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271877g00009 653 Gene3D Ribonuclease Inhibitor 12 282 IPR032675 -
Stsc271877g00009 653 ProSiteProfiles Protein kinase domain profile. 387 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271877g00009 653 Gene3D Transferase(Phosphotransferase) domain 1 557 652 - -
Stsc271877g00009 653 Pfam Leucine Rich Repeat 121 142 IPR001611 GO:0005515
Stsc271877g00009 653 Pfam Leucine rich repeat 144 201 IPR001611 GO:0005515
Stsc271877g00009 653 SUPERFAMILY L domain-like 62 238 - -
Stsc271877g00009 653 ProSiteProfiles Leucine-rich repeat profile. 190 211 IPR001611 GO:0005515
Stsc271877g00009 653 SMART LRR_typ_2 188 211 IPR003591 -
Stsc271877g00009 653 SMART LRR_typ_2 164 187 IPR003591 -
Stsc271877g00009 653 SMART LRR_typ_2 94 118 IPR003591 -
Stsc271877g00009 653 FunFam Putative LRR receptor-like serine/threonine-protein kinase 348 462 - -
Stsc271877g00009 653 Pfam Protein tyrosine and serine/threonine kinase 392 553 IPR001245 GO:0004672|GO:0006468
Stsc271877g00009 653 PRINTS Leucine-rich repeat signature 167 180 - -
Stsc271877g00009 653 PRINTS Leucine-rich repeat signature 188 201 - -
Stsc271877g00009 653 SUPERFAMILY Protein kinase-like (PK-like) 377 648 IPR011009 -
Stsc271877g00009 653 Gene3D Phosphorylase Kinase; domain 1 347 462 - -
Stsc271877g00009 653 Gene3D Transferase(Phosphotransferase) domain 1 463 556 - -
Stsc271877g00009 653 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 55 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271877g00009 Stsc-Chr271877 56142 58692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271877g00009 72 648 Receptor kinase-like Gene Family AT5G07280 30.926 1.04e-66 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Stsc271877g00009 PK_Tyr_Ser-Thr 1.4e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271877g00009 - - gmx:100788556 769.229