Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271877g00008 ATGAAATGGAGAACTGACGAAGCAACTGCCGTGACAGTATTCATGGACAACTTACCACGTAATACTACGGTGGGATGGCTATGGAAAACTTTTGGTAAGGAAGGGAGAGTAGTGAACGTCTTTCTATCGAGAAAGGAACGAAAATGGAATCCGTTGAGATTCGCCTTCGTCAGATTCAAAACAAAGCATGAGGCAGCAACAGCAATACAAAGATTTGATGGTTGGTCAGTTTGGGATTGCCACCTTAAACTCTCCGAATCCAAGTTCAGGAGGAGGGGAGAAGGAGTACTGGAAAGGAGAGAACCACGACCATCAAACACTCATGAGGCGATACAGTCTTATCAAATTGCGGTGATGAATACCCTCAACAAAGAACCAATCCTCAGAGTAAGAGATGATAATGCCATCCAAACGTTGGGTAACTCCAAGCTTGATCTAAAGGCCGATGAGGGTATGAAAGAGGTAATGAGCCAAAGCCTAGTGGGAGAAGCCCCACGGCCATTCCAGTTCTCAAAACTGAAGAGTGAGGTCATGAAGGACTGCCAAACGGTGATCGATATGAAAATGATGGGTTCTTGGAAAGCAGTCATGATCTTTGATTCGGTAAAAAACATGATGGCAGCAGAAGAGTCCGCACTCTTGCTCAATCACTTCATTGAAATCAGAAGGTGGTTGCCTGGGGAGGTAAACAGAACTAGAAGATTTTGGTTGGAATTCAATGGTCTACCTGGAAATGCATGGACGATAGAAAACATGGAGAGAATTGGTAATGTCTGGGGAACAGTCATACGAGTGGACAAAGGAAAGGGGGATCACTTTAACGCCTTCCGGGTTCTGGTAGATGCAAAAATCTCTCCCATGATCCAAGCCTCCTTACTGTGA 882 0.449 MKWRTDEATAVTVFMDNLPRNTTVGWLWKTFGKEGRVVNVFLSRKERKWNPLRFAFVRFKTKHEAATAIQRFDGWSVWDCHLKLSESKFRRRGEGVLERREPRPSNTHEAIQSYQIAVMNTLNKEPILRVRDDNAIQTLGNSKLDLKADEGMKEVMSQSLVGEAPRPFQFSKLKSEVMKDCQTVIDMKMMGSWKAVMIFDSVKNMMAAEESALLLNHFIEIRRWLPGEVNRTRRFWLEFNGLPGNAWTIENMERIGNVWGTVIRVDKGKGDHFNAFRVLVDAKISPMIQASLL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271877g00008 293 Gene3D - 2 115 IPR012677 -
Stsc271877g00008 293 CDD RRM_SF 13 85 - -
Stsc271877g00008 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Stsc271877g00008 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 89 IPR000504 GO:0003723
Stsc271877g00008 293 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Stsc271877g00008 293 SMART rrm1_1 12 85 IPR000504 GO:0003723
Stsc271877g00008 293 Pfam Domain of unknown function (DUF4283) 152 280 IPR025558 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271877g00008 Stsc-Chr271877 43702 44667 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271877g00008 11 100 Eukaryotic Initiation Factors Gene Family AT1G71770 30.000 2.87e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271877g00008 K12891 - ahf:112794598 93.9745