Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271877g00007 ATGGGAATTGTGGCTGGCGAAGAGAGAGAGAAAGAAAATATGACAAAAGAAGACAAGAAACGAGGTTGCATGAGAGAGAAACACAACAAAAAGAAGATTGTGTTTGTGTTCGAGAAAGAGAGGCACAGAAGAAGAAGAAGAGAGCCTCTGCCCTCACGGACATGGTCGAAGTCGAAGGGACCTTCCTCTGAGATCATCATCCTCCCAGGGCCACCATTACCACAATTCAATAAGGGGTTCACTTCTATTTTTTCCCTCATAATCAAATTTTCAATATTTCCCTTCAAACCATTCCCTCTTTTCCCCCTTCTTCTTCCTCAAATTTCATTCCATCCTGCGTTCTTCATTGCTTCCTCTCCATTCTCCCTTTTGCAGGGTAATTCACTCCCCCTCCAAACATTGCTGGGAATCATTCATTCTGAGAGGGGGGATATTGAGCTCGGTTATGTACTTGTTGTTGGGCTTGGGCACAAGCTTCCTGGCAATAAAGAGATATTGACTCTGTCTCAAAGTCTACCAGTGTGGCATTGGCCCCACAAAGACATGGAAAGTAAATGGCCCCCCTTTGGGTTATGCCTTTGGACTTACATTCTACTCATCTCTCTCTGTGGAATTCAGCAGTCTTGCTCTCTCAATGATGAAGGATTGGCTTTACTGAAATTCCAGCTCAGAATCACGACTGATCCTTACAGGGCTCTGGCGAATTGGAATTCAAATGATTATGATGCCTGCAAGTGTTCAGGTGTCCATTGTGGTAAAGTGAATATGCTGGACCTCAATGGACTATCTTTGGCAGGGACATTGGCCCCTGAGCTTGAGAAAATTAGTCACTTTAAATATCTGTCGGTTTGTGGAAATACAATTGTAGTCACTGATGATTCTTCATCTCTGAAAACTTTACCTCCCCTCAAGAATAGAAAGTTGGCACCATGGTTCAAGACAGAGAAGGCTTCCTCTCATGGCATCAAAGAGAATTACTGCAACAATTTGTCCGGTTCTGATGGGCTAGAGATTGATCCAGGAACATTAAATCTAGTCAATTCTGCACGTCGACGGTTGCTTGATGAGCCCAGCAGTAATCTCGCCGCTGCACCTTTTCCTGGCGCGCCTGTACCGATTAGTTCTGTTCCAACTTCCCTGAGCAGTGGAGCTTTCCCAGCTGTACCCGTTCCCAAACAAACGGAGTCTCCCAACTCACCGCCTTCAAGTTCTAATTCTCCACCAAAAGATAGTCATTCTTCAAACAAAAATGGTTCATTTCCTTGGAAGATTGTTCTTATTGTTTTATGCGTGCTTATCTTGGTCATGATTATTTTGGTCCTGCTTTGGATTTGGAGAAAAAGAGCTGTAAAAGTAATAAAGCCCTGGAAGACAGGAATAAGCGGACAGTTGCAGAAAGCATTTGTAACCGGGGTCCCAAAATTGAACCGAGCAGAGCTGGAGACAGCTTGTGAAGATTTCAGCAATATCATTTATGAGTTAGAGGCATGCACCATATACAAAGGAACTCTGTCCAGTGGCGTTGAGATTGCTGTTGTTTCTACTTGTGTTACTTCTTCAGCAAATTGGTCAAAGAGCATGGAGATGGCATATCGGAAAAAGCTCGATACTTTATCTCGTATTAACCACAAGAACTTCACCAATCTAATTGGTTACTGTGATGAAGAACAACCATTCACAAGGATGATGGTGTTTGAGTATGCTCCAAGCGGAACCCTATATGAGCATCTGAATGTTCCTGAAGTTGAACATCTTGACTGGAGTGCAAGGATGAGGGTTATCATGGGCACTGCTTATTGTCTTCAGTACATGCACCATGATCTGAATCCGCCAATAGCTCATTCCGAGCTGAGTTCCGAATCTATATTGTTAACTGATGACTTTGCAGCTAAGATCGCAGAGATAATTTTTAGCAAGAGTGTAGTATCGCCAACCAAAACAACTGAAGGTGAATCAAAGAAATCCAAGTTGCCACCCGAGTGCTGTCCTGAAACCGACGTCTATAGATTTGGACTTTTATTGCTTGAAATCATTACTGGGAAACTACCATACCAGGACCGTCGCAACCTTGCTGTCCTTGCAGACTGGGCTGCTCAGTGCTTGCATCAGAAGACAAGCGACCGCTCTATTGTTGATCCCACGCTGCAGTCCTTCAAAGACGAAGAACTCAGTGTCATATTTGATGTGATCTATGAATGCACTCAATCAAATGCAAGTCTAAGACCAACAATGAAGGAGGTAACTCTCAAGTTGAGGGATGCACTTAAAATATCACCGGACCAAGCTGTCCCAAGACTTTCTCCACTCTGGTGGGCTGAACTGGAGATCTTGTCAATGGAGGGCACTTAA 2349 0.4385 MGIVAGEEREKENMTKEDKKRGCMREKHNKKKIVFVFEKERHRRRRREPLPSRTWSKSKGPSSEIIILPGPPLPQFNKGFTSIFSLIIKFSIFPFKPFPLFPLLLPQISFHPAFFIASSPFSLLQGNSLPLQTLLGIIHSERGDIELGYVLVVGLGHKLPGNKEILTLSQSLPVWHWPHKDMESKWPPFGLCLWTYILLISLCGIQQSCSLNDEGLALLKFQLRITTDPYRALANWNSNDYDACKCSGVHCGKVNMLDLNGLSLAGTLAPELEKISHFKYLSVCGNTIVVTDDSSSLKTLPPLKNRKLAPWFKTEKASSHGIKENYCNNLSGSDGLEIDPGTLNLVNSARRRLLDEPSSNLAAAPFPGAPVPISSVPTSLSSGAFPAVPVPKQTESPNSPPSSSNSPPKDSHSSNKNGSFPWKIVLIVLCVLILVMIILVLLWIWRKRAVKVIKPWKTGISGQLQKAFVTGVPKLNRAELETACEDFSNIIYELEACTIYKGTLSSGVEIAVVSTCVTSSANWSKSMEMAYRKKLDTLSRINHKNFTNLIGYCDEEQPFTRMMVFEYAPSGTLYEHLNVPEVEHLDWSARMRVIMGTAYCLQYMHHDLNPPIAHSELSSESILLTDDFAAKIAEIIFSKSVVSPTKTTEGESKKSKLPPECCPETDVYRFGLLLLEIITGKLPYQDRRNLAVLADWAAQCLHQKTSDRSIVDPTLQSFKDEELSVIFDVIYECTQSNASLRPTMKEVTLKLRDALKISPDQAVPRLSPLWWAELEILSMEGT 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271877g00007 782 Gene3D Phosphorylase Kinase; domain 1 456 567 - -
Stsc271877g00007 782 ProSiteProfiles Protein kinase domain profile. 374 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271877g00007 782 Pfam Leucine rich repeat N-terminal domain 212 251 IPR013210 -
Stsc271877g00007 782 FunFam Inactive receptor-like serine/threonine-protein kinase 459 567 - -
Stsc271877g00007 782 Gene3D Ribonuclease Inhibitor 210 344 IPR032675 -
Stsc271877g00007 782 MobiDBLite consensus disorder prediction 386 415 - -
Stsc271877g00007 782 Gene3D Transferase(Phosphotransferase) domain 1 569 763 - -
Stsc271877g00007 782 PANTHER PROTEIN MALE DISCOVERER 2 200 780 - -
Stsc271877g00007 782 SUPERFAMILY Protein kinase-like (PK-like) 478 748 IPR011009 -
Stsc271877g00007 782 MobiDBLite consensus disorder prediction 1 23 - -
Stsc271877g00007 782 MobiDBLite consensus disorder prediction 40 61 - -
Stsc271877g00007 782 Pfam Protein tyrosine and serine/threonine kinase 498 750 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271877g00007 Stsc-Chr271877 31954 36770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271877g00007 480 764 Receptor kinase-like Gene Family AT5G65700 30.132 2.06e-36 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Stsc271877g00007 PK_Tyr_Ser-Thr 6.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271877g00007 - - gmx:100786591 647.891