Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271877g00005 ATGTCAGAGGGATTTGAGATTCATCATCATCAAGAGAATAATGAAGGGAGTAGTGGCGGCAAGAGTAGTAGTAATAATGAGAATGAGGGTGAGGAAAATTCATTGGGTTCTTGTTCCTTGAAATGCTCATCATTTGACTTGAATGAAGAAGCGGGTAGTAGCAGTGAGGAGGAGGAAGAAGAAGATTATAATAATAATAATAATGATGATGAGAAGAAAGAAGGAAAGGAAGATATTAATAATAATGATCATGAAGAAGGGAATTCATCAAGAAACAGAAGCAGCAGCAGCACAAACTCAAGAGAAGAAGGGAAGAGATCATCAGGGAGTGGTGTGAGACAATATGTTCGATCAAAGATGCCAAGACTTCGTTGGACTCCTGATCTTCATCTCTCTTTCGTCCATGCTGTTCAGAGGCTTGGAGGTCAAGAAAGAGCAACACCTAAATTGGTGCTTCAGCTAATGAATGTGAGAGGATTAAGCATTGCTCATGTCAAGAGTCATTTACAGATGTATCGAAGCAAAAAACTTGATGATTCTGGCCAAGTAGTAAGAAGTGAAACACAGAGAAGCAAGAATGAAGTAGGTGGTATGGTGTATGAGAGGATGATGATGAAGAGTAGTAGTCCCCATCAGCATTTCAAGATGGGAAATGGTGGAATTATTCTTACTACTCCATTCTCCCTCCCACATTCAAAGCCAGCCACAAACCATTTATGGCACTTGAATCAACATCATCATCAACAACAACTACCTTTTACTAGAAGACCAAGTTACCCAACACCACCATTGATGGATGCAGCAGCAGCAGCAGGCAGCAGAATTACACCCATGAGACCAAGCCGATTTCTTGAAGAGAAAAAGTGGCCTCCTTTTGAAACTACTCACTGGAAATTCAAAAGGCTTCCTATTACCAACAACATTACACTACCCTCCTCACAATTATCCTCTTCTACTGCTGTTAATCTTCTTCATCAATTTCCCACCACTACTTCTACTACTACTCCATCTGACTTCATCACCTTTGGAAACACAAGAATCAGGGATTATCTATCAAACTCCAAGTTAAATAATAATCAAGACAAGTTGCAGAAAGAGAAGCAATGGGTGCCTGATTTGCAACTGGGTTTGAGTCATCATCATCACAAAGATGGAGACAACAATAATGATGGCAAAGGAACCCCAGAAATTAACACTAAACTTTCACTTTCATAG 1215 0.3992 MSEGFEIHHHQENNEGSSGGKSSSNNENEGEENSLGSCSLKCSSFDLNEEAGSSSEEEEEEDYNNNNNDDEKKEGKEDINNNDHEEGNSSRNRSSSSTNSREEGKRSSGSGVRQYVRSKMPRLRWTPDLHLSFVHAVQRLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDDSGQVVRSETQRSKNEVGGMVYERMMMKSSSPHQHFKMGNGGIILTTPFSLPHSKPATNHLWHLNQHHHQQQLPFTRRPSYPTPPLMDAAAAAGSRITPMRPSRFLEEKKWPPFETTHWKFKRLPITNNITLPSSQLSSSTAVNLLHQFPTTTSTTTPSDFITFGNTRIRDYLSNSKLNNNQDKLQKEKQWVPDLQLGLSHHHHKDGDNNNDGKGTPEINTKLSLS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271877g00005 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 177 IPR017930 -
Stsc271877g00005 404 MobiDBLite consensus disorder prediction 66 90 - -
Stsc271877g00005 404 MobiDBLite consensus disorder prediction 1 15 - -
Stsc271877g00005 404 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 90 204 IPR046955 GO:0003700
Stsc271877g00005 404 Pfam Myb-like DNA-binding domain 123 173 IPR001005 -
Stsc271877g00005 404 FunFam Myb family transcription factor 119 177 - -
Stsc271877g00005 404 SUPERFAMILY Homeodomain-like 119 175 IPR009057 -
Stsc271877g00005 404 MobiDBLite consensus disorder prediction 377 404 - -
Stsc271877g00005 404 MobiDBLite consensus disorder prediction 1 115 - -
Stsc271877g00005 404 Gene3D - 120 177 - -
Stsc271877g00005 404 MobiDBLite consensus disorder prediction 51 65 - -
Stsc271877g00005 404 MobiDBLite consensus disorder prediction 91 105 - -
Stsc271877g00005 404 MobiDBLite consensus disorder prediction 16 50 - -
Stsc271877g00005 404 NCBIfam myb-like DNA-binding domain, SHAQKYF class 121 176 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271877g00005 Stsc-Chr271877 16998 20560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271877g00005 112 182 G2-like Transcription Factor Family AT2G42660 81.690 5.15e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc271877g00005 Myb_DNA-binding 9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271877g00005 - - adu:107482239 390.578