Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271875g00049 ATGGTTCTCCAGAAATCATCATTATCATCTATGGATTTTAAAGTGAGGAGGAATCCAGCAGAGCTAGTGCCACCTGCTGAACCCACTCCCCATGAGCTTAAGCTGGGAGACTCAGGGAAGGAACAAAGGACAAACTCATGGTGGATTGCACAGGTGAAGGTGTATTGTTCATTGAAGCTTATGCAGATGTCGCACTTGACCAGTTTGGTGTTGATCCTCTGCCTCCATTCCCTTGCTTCCATGAGCTCCTCTGTCATGTTCCACTTCCTGATGATGGAATTATTAACTCTCCCGCTCCTTCTTATTCAGGTCACACGGCTGAAATGTGGTGGCTTTATCTTTGGTATACCTGTGAACCATGTAATGTGTGATGGAATTGGAATTGCCCAATTTATAAAGGCTGTTGCAGAAATAGCCCAAAGTGCACCTAAGCCTTCTATTATGCCAGTGTGGTGTAGGGACCATCTTTGCGCCAGAGACCCACCAACAGTTACATGCCTCCACCTTGAATACCAACAACAACCACTTCATGACAACAAAACTCTCTCCTTCAAATCCTCCCATGCTTCCTTCTTCTTTGGCCCCAAACACATTCATGCATTACGCAACCTCCTCCCTCCTCACCTTGCTCAATCTTCCTCCACCTTCGATATCCTCACTGCATTCCTATGGCGTTGTCATACAGCTGCACTCCATTGGCAAAACCCTAATCAAGAGATCAGATTTACGTTTAATCGTCCACTACCTGAAGGGTATTATGGCAACGCTTTTGTGATGCCTGCGGTAGTTTCCACTGTGGAGATGTTGTGCGATCGGCCCTTGAGCTACGCGTTGGAATTGGCGAAGAAATCAAAGAAAGGATCGTTTATAGTTTCAGACCTCACAAAATCTAGGTTAAGTGATGTGGATTTCGGATGGGGTAAGCCTCTGTATTCTGGAGTAAACAAGGATGGCATAGGTGATAATCCTGGTGTGAGCTACTATATTCCGTATACTAACTCTAAAGGAGAGCATGGTAAAGTGGTCTTAATTTGCCTCCCAGATGAAGCCATGAAAAGGTTTCACAAAGAGCTTAATGTAATACTACTTCACATCAACGATGAAGATGAACCTATCATGTAA 1122 0.4465 MVLQKSSLSSMDFKVRRNPAELVPPAEPTPHELKLGDSGKEQRTNSWWIAQVKVYCSLKLMQMSHLTSLVLILCLHSLASMSSSVMFHFLMMELLTLPLLLIQVTRLKCGGFIFGIPVNHVMCDGIGIAQFIKAVAEIAQSAPKPSIMPVWCRDHLCARDPPTVTCLHLEYQQQPLHDNKTLSFKSSHASFFFGPKHIHALRNLLPPHLAQSSSTFDILTAFLWRCHTAALHWQNPNQEIRFTFNRPLPEGYYGNAFVMPAVVSTVEMLCDRPLSYALELAKKSKKGSFIVSDLTKSRLSDVDFGWGKPLYSGVNKDGIGDNPGVSYYIPYTNSKGEHGKVVLICLPDEAMKRFHKELNVILLHINDEDEPIM 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271875g00049 373 Gene3D - 62 170 IPR023213 -
Stsc271875g00049 373 Gene3D - 171 283 IPR023213 -
Stsc271875g00049 373 Gene3D - 284 362 IPR023213 -
Stsc271875g00049 373 PANTHER ACYL TRANSFERASE 4 48 359 - -
Stsc271875g00049 373 Pfam Transferase family 95 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271875g00049 Stsc-Chr271875 243372 245259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271875g00049 96 358 Monolignol Biosynthesis Gene Families AT5G48930 27.184 2.65e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271875g00049 K19861 K13610 gmx:100795237 338.576