Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271875g00048 ATGTCTGTAGCTGCAGCAGCACTTGTTGCAGCTATAGCTTTGATATTCCTTGTAACGCAAACTAGTTTCAGAAGGTTCCCTAGCAAGAAAGGAAAGCAGCACGTCATTGGGGGCACTGTGTTACACCAGTTGTTCAACTTCCATAGGCTGCATGATTTCATGGCTGATCTAGCAAGAAAACACAAGACTTATCGGTTGCTCGGCCTTTTCAGAAGTGAGGTTTACACTGCAGACCCTGTGAATGTTGAGTATATCCTCAAAACAAAGTTTGCAAACTTTGGCAAGGGTTTGCACCACCATGGAATTTTGACAGATCTTTTGGGTGATGGAATATTCACAGTAGACGGAGAGAAGTGGCAACATCAGAGGAAAGTGGCAACCCATGAAATCTCCACCAAAGAAGTCAAAGATTTTAGCCTGCAAGTGTTTCAATCTAATGCAGTAACACTTGCAAGAATTGTTTCAGAGGCTGCTACATCAAATAAAGCAATTGACTTCCAGGATTTGTTTATGAAATCCACCTTAGACCAAGTGTTTAAGATCATCATTGGCGTAGATTTGGACACAATGTGCGGAACATATGAAGAAGGCACCAAATTCTCCAATGCCTTTGATGAAGCAAGTGGGATAACGATGTACCGGTATGTTGATATTTTCTGGAAGATCAAGCGGTTCCTCAATATTGGATCGGAAGCAGTACTGAGGAACCGTATTAAAGTTGTTGATGATTTTGTGTATGAACTTATCAGAAGCAAGATTGGGCAACTCAAAAAGCCTCAACATGATTCCCATATGATAAAAGTAGATTTGGTGTCAAGGTTTCTGGCATTGGAAGAGACAGATCCAAAGTACCTAAGAGACATAATCCTCAATTTCATAATTGCAGGAAGAGACACAACAGCTACTACCCTTTCCTGGTTCCTTTACTTGCTCTCCAAGCATCCTCATGTCCAAGAAAAAATTGCACATGAAGTTGGACATATCACAAAGTTGAACAACACTTGTAATATTGAAGAAGTTACAAAGGCCCTAACTGAAGAGACTCTTCAAAAGATGCATTATTTGCATGCAGCTTTGACTGAGACACTTAGACTCTACCCTGCTGTTCCTGTGGATGGGAAACAATGCTTATCCGATGAAACTCTGCCTGATGGATTCAGTGTCAAGAAAGGTAACATGGTATGTTATGTACCATATTCCATGGGCAGGATGGAATTCCTATGGGGCAATGATGCTGAGGAATTCCGTCCGGAGAGATGGCTTGATGAGAATGGAACTTTCCAACAACAGAGTTCTTTCAAGTTCACAGCCTTTCAGGCAGGACCAAGAATATGTCTAGGAAAAGATTTCGCCTACAGACAGATGAAAGTTTTCGCAGCTGTTCTTTGTCATAGCTACAAATTCAAGCTTGCTTTCGAAAACAAACAAGTTAATTATATGGTTATGCTGACTCTGCACATTGATGGTGGTCTTCATGTACATGCTTCCCATAGATAG 1497 0.4115 MSVAAAALVAAIALIFLVTQTSFRRFPSKKGKQHVIGGTVLHQLFNFHRLHDFMADLARKHKTYRLLGLFRSEVYTADPVNVEYILKTKFANFGKGLHHHGILTDLLGDGIFTVDGEKWQHQRKVATHEISTKEVKDFSLQVFQSNAVTLARIVSEAATSNKAIDFQDLFMKSTLDQVFKIIIGVDLDTMCGTYEEGTKFSNAFDEASGITMYRYVDIFWKIKRFLNIGSEAVLRNRIKVVDDFVYELIRSKIGQLKKPQHDSHMIKVDLVSRFLALEETDPKYLRDIILNFIIAGRDTTATTLSWFLYLLSKHPHVQEKIAHEVGHITKLNNTCNIEEVTKALTEETLQKMHYLHAALTETLRLYPAVPVDGKQCLSDETLPDGFSVKKGNMVCYVPYSMGRMEFLWGNDAEEFRPERWLDENGTFQQQSSFKFTAFQAGPRICLGKDFAYRQMKVFAAVLCHSYKFKLAFENKQVNYMVMLTLHIDGGLHVHASHR 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271875g00048 498 Gene3D Cytochrome P450 27 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271875g00048 498 PRINTS P450 superfamily signature 445 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271875g00048 498 PRINTS P450 superfamily signature 295 312 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271875g00048 498 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271875g00048 498 PRINTS P450 superfamily signature 436 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271875g00048 498 PANTHER CYTOCHROME P450 17 493 - -
Stsc271875g00048 498 Pfam Cytochrome P450 46 475 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271875g00048 498 SUPERFAMILY Cytochrome P450 41 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271875g00048 498 CDD CYP86A 62 491 - -
Stsc271875g00048 498 PRINTS E-class P450 group I signature 284 301 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271875g00048 498 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271875g00048 498 PRINTS E-class P450 group I signature 435 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271875g00048 498 PRINTS E-class P450 group I signature 304 330 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271875g00048 498 PRINTS E-class P450 group I signature 445 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271875g00048 Stsc-Chr271875 240221 242512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271875g00048 28 498 Cytochrome P450 AT2G45510 51.255 6.90e-171 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271875g00048 - - twl:119985375 662.529