Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271875g00046 ATGGCTTCCAACACCACCAAGAAGAACATTGGCAATGGCAATAGCCGTAGTATTGATGAGTTGTTCAAAGCTCAAGCTCACTTGTACAGAGTCATGGCAAGTTACACCTTACCCATTTGTGTCAAGTGGGCCATTGACCTTTCCATACCAAACATAATTCATAGCCGTCATTCTCATTCCATTTCCCTAACTGATCTCGTTTCAGCCCTTAACATTCCACAACAAAAAACTCAATATGTTCAGCGCATCATGCGCTTGTTGACCCACGACGGTATATTTGCCGTCGTGGTCAACCAAGAAACCAAAGAAGAAGAGTATGTACTTACTCCCACTTCTGAGCTTCTCGTAAGAGACTCTGATCATTGTGTCTCGGCCATGGCCGAGTACATTATTAACCCAACCACGGTTGGGTTTTATAATTACTTGGCGAAATGGACGTGTGACAAGAAGGCACAAACAACGGTTGAAACTGCTTTAGGGTCTGCTACTAGCTACTGGGATTTTATTCATGAAAACCCTAAGGAGTTGAAGATTTTCAATGATGGTATGGAGAGTGATTCTAATGTTGTGAGGTTTGCTTTGAGGGATTGCAAATCAGTGTTTGAAGGGTTGGATTCGTTGGTTGATGTTGGTGGTGCCACTGGTAACACTGCTAAGATCATTTGTGAGGCGTTTCCAAAGCTGAAATGCACAGTGTTGGATCTTCCACATGTTGTTGCTGGCTTGGCTGAAACCGAGAACTTGAAATTTCTTGGAGGGAGCATGTTTGATTTTATCCCTCAAGCTGATGCTATTTTATTCAAGTGGGTTCTGGGGAATTGGAGTGATGATCATTGCATACAAGTGTTAGAAAAATGTAAGGAAGCAATTTCAGGCAAAAGTGGCGGAGGAAAAGTGATTATTATTGACATAGTAATAAATGAAAATGAAGATGAACATGATGTGATGGAATTAAAACTATTTTCTGATCTAGCAGCAATGACTCTTCTTGATGGAAAAGAGAGAGATGAGAAAGATTGGAAAAGACTCTTCTTGAAAGCAGGCTTCAAGAACTACAACGTATTTCCTATATTTGGCTTTAGGTCGCTAATTGAGGTTTATCCTTAA 1107 0.4083 MASNTTKKNIGNGNSRSIDELFKAQAHLYRVMASYTLPICVKWAIDLSIPNIIHSRHSHSISLTDLVSALNIPQQKTQYVQRIMRLLTHDGIFAVVVNQETKEEEYVLTPTSELLVRDSDHCVSAMAEYIINPTTVGFYNYLAKWTCDKKAQTTVETALGSATSYWDFIHENPKELKIFNDGMESDSNVVRFALRDCKSVFEGLDSLVDVGGATGNTAKIICEAFPKLKCTVLDLPHVVAGLAETENLKFLGGSMFDFIPQADAILFKWVLGNWSDDHCIQVLEKCKEAISGKSGGGKVIIIDIVINENEDEHDVMELKLFSDLAAMTLLDGKERDEKDWKRLFLKAGFKNYNVFPIFGFRSLIEVYP 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271875g00046 368 Gene3D Vaccinia Virus protein VP39 116 368 IPR029063 -
Stsc271875g00046 368 FunFam O-methyltransferase ZRP4 117 368 - -
Stsc271875g00046 368 PANTHER O-METHYLTRANSFERASE 24 351 IPR016461 GO:0008168
Stsc271875g00046 368 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 124 367 IPR029063 -
Stsc271875g00046 368 PIRSF O-mtase 5 368 IPR016461 GO:0008168
Stsc271875g00046 368 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 368 IPR016461 GO:0008168
Stsc271875g00046 368 Gene3D - 11 115 IPR036388 -
Stsc271875g00046 368 SUPERFAMILY "Winged helix" DNA-binding domain 19 119 IPR036390 -
Stsc271875g00046 368 Pfam O-methyltransferase domain 139 350 IPR001077 GO:0008171
Stsc271875g00046 368 Pfam Dimerisation domain 40 88 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271875g00046 Stsc-Chr271875 225939 228283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271875g00046 30 354 Monolignol Biosynthesis Gene Families AT5G54160 29.518 1.69e-38 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271875g00046 K22588 - gmx:100819796 351.288