Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc271875g00045 | ATGCCTTCCCTTCCTCTCTCTAACGCCGCTCCTCTTCCTTCCCCTTCTAAGGACAAAAAACACAAATCCAAAAAGGAAAAGAAAGACACCACCGCAAGCAACAACGACGCCGTCGCTCACCAGCTAAACGACGCCGTTTCTGACGCCAAGAAGAAGAGCTCCAAGAAGAGGAAGAAGGTTTCCTCTGATGAGGATGAGGACGATCAGAAGAGTGACACTAGCTCTGAGCTCGTTGAGCCTCAGAATGATGAAGGCTTGAAATCCAAGGACAAGAAGAAGAGCAAGAAGGAGAAGAACAAGAAGGCTAAGTTGGATATGGATGAGGAAGAGGAGGAGGAAGAGGAGGTTCTCAAGAAGGAGGAGGATCCTAATGCCATTACCAACTTCAGGATCTCTGAGCCTCTTAGGGCAAAGCTTAAGGAGAAGGGAATTGAGTCTCTCTTCCCGATTCAAGCCATGACCTTCGATATCATCCTCGATGGCTCTGATTTGGTTGGTCGTGCTCGTACTGGTCAGGGTAAGACACTGGCTTTTGTGTTGCCCATACTAGAGTCTTTAATCAACGGTCCTGCGAAAGCTTTCAGGAAGACTGGTTTTGGGAGGTCTCCAACTGTCCTTGTTCTTTTACCCACCAGGGAATTGGCAAGTCAGGTGTATGCTGATTTTGAAGTTTATGGTGGAGCAATGGGATTGAGTTCCTGCTGTTTATATGGTGGAGCTCCATACCAGACTCAAGAGAGTAAGCTCAGGAGAGGTGTTGATATTGTTGTTGGTACACCGGGTCGTGTGAAGGATCATATAGAGAGGCAAAATATCGACCTGAGCCAGGTAAAGTTCCGTGTACTTGATGAGGCTGACGAGATGCTCAGGATGGGTTTTGTTGAAGATGTTGAACTAATTCTAGGCAAGGTACAAGATGTTACCAAAGTTCAGACGCTTCTTTTCAGTGCTACATTGCCAGACTGGGTTAAGCATATTTCTGGGAAATTTCTGAAACCAGATAAGAAAACTGCAGATCTGGTTGGAAACGCAAAAATGAAGGCTAGCACCAGTGTTAGACATATTGTTCTTCCATGTAACGTTTCTGCCAGGGCCCAGCTTATCCCAGACATTATACGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTACTGAGAAAAAGGAGTCTGCTTCTGAGCTTGCCGGGTTGTTGCCTGGAGCAAGAGCTCTACATGGTGATATACAGCAATCACAACGTGAGGTTACACTGTCTGGTTTTAGGTCTGGGAAATTCATGACTCTGGTTGCCACCAATGTGGCCGCCAGGGGTTTAGATATTAATGATGTTCAGTTAATTATCCAGTGCGAGCCTCCGCGTGATGTAGAAGCCTACATTCATCGATCTGGGCGCACAGGAAGAGCAGGTAATACTGGAGTTGCTGTAATGCTTTATGATCCCAGACGTTCAAATGTATCTAAAATAGAAAGGGAATCGGGTGTGAAATTTGAACACATATCTGCCCCCCAGCCTGATGATATTGCCAAAGCCGTTGGTGGAGAAGCTGCTGAGATGATTACCCAAGTGTCTGATAGTGTGATTCCTGCGTTCAAGTCCGCGGCTGAGGAGCTTTTGAACAACTCTGGTTTATCAGCTGCTGATCTACTTGCTAAAGCTCTTGCCAAGGCTGTGGGTTTTACTGATATAAAGAAAAGATCACTTCTAACTTCCATGGAAAACTACGTAACACTGCACATTGAGATTGGAAAACCTATGTTCACTCCATCCTTTGTATTTGGAATCCTAAGGAGATTCTTGCCCGAGGAGCAGGTTGAGGCAGTGCAGGGTCTAACTCTCACTGCAGATGGAAATGGTGCAGTTTTTGATGTACCGGCCAAGGATTTAGATATTTATCTTACTGGTCAGGAGAAAGCTGGTAATGTAAGGCTAGAGGTGTTGAAAACATTACCACGTTTGCAAGAAAGAGAGCAATCAAGAGGGGGCAGATTTGGTGGCGGTCGAGGGTTTAATGATAGAAATGGCGGGAACAGGTTTGGAAGAGGTGGTGGCAGGAATGGTAGATTTGGGCAGAACGATAGGTTTTCGAATGGGAGAGGTAATTTTAACAAAGGTGGAAAGAGATGGTAA | 2127 | 0.4575 | MPSLPLSNAAPLPSPSKDKKHKSKKEKKDTTASNNDAVAHQLNDAVSDAKKKSSKKRKKVSSDEDEDDQKSDTSSELVEPQNDEGLKSKDKKKSKKEKNKKAKLDMDEEEEEEEEVLKKEEDPNAITNFRISEPLRAKLKEKGIESLFPIQAMTFDIILDGSDLVGRARTGQGKTLAFVLPILESLINGPAKAFRKTGFGRSPTVLVLLPTRELASQVYADFEVYGGAMGLSSCCLYGGAPYQTQESKLRRGVDIVVGTPGRVKDHIERQNIDLSQVKFRVLDEADEMLRMGFVEDVELILGKVQDVTKVQTLLFSATLPDWVKHISGKFLKPDKKTADLVGNAKMKASTSVRHIVLPCNVSARAQLIPDIIRCYSSGGRTIIFTEKKESASELAGLLPGARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNVSKIERESGVKFEHISAPQPDDIAKAVGGEAAEMITQVSDSVIPAFKSAAEELLNNSGLSAADLLAKALAKAVGFTDIKKRSLLTSMENYVTLHIEIGKPMFTPSFVFGILRRFLPEEQVEAVQGLTLTADGNGAVFDVPAKDLDIYLTGQEKAGNVRLEVLKTLPRLQEREQSRGGRFGGGRGFNDRNGGNRFGRGGGRNGRFGQNDRFSNGRGNFNKGGKRW | 708 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc271875g00045 | 708 | Pfam | Helicase conserved C-terminal domain | 370 | 469 | IPR001650 | - | |
| Stsc271875g00045 | 708 | Coils | Coil | 92 | 119 | - | - | |
| Stsc271875g00045 | 708 | Gene3D | - | 575 | 647 | - | - | |
| Stsc271875g00045 | 708 | Gene3D | - | 358 | 574 | IPR027417 | - | |
| Stsc271875g00045 | 708 | Gene3D | - | 71 | 337 | IPR027417 | - | |
| Stsc271875g00045 | 708 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 155 | 337 | IPR014001 | - | |
| Stsc271875g00045 | 708 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 281 | 289 | IPR000629 | - | |
| Stsc271875g00045 | 708 | MobiDBLite | consensus disorder prediction | 655 | 708 | - | - | |
| Stsc271875g00045 | 708 | CDD | DEADc | 135 | 332 | - | - | |
| Stsc271875g00045 | 708 | MobiDBLite | consensus disorder prediction | 1 | 120 | - | - | |
| Stsc271875g00045 | 708 | SUPERFAMILY | RNA-binding domain, RBD | 562 | 645 | IPR035979 | GO:0003676 | |
| Stsc271875g00045 | 708 | CDD | SF2_C_DEAD | 352 | 478 | - | - | |
| Stsc271875g00045 | 708 | CDD | GUCT_RH7_like | 565 | 650 | - | - | |
| Stsc271875g00045 | 708 | Pfam | GUCT (NUC152) domain | 558 | 653 | IPR012562 | GO:0003723|GO:0004386|GO:0005524 | |
| Stsc271875g00045 | 708 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 110 | 538 | - | - | |
| Stsc271875g00045 | 708 | FunFam | DEAD-box ATP-dependent RNA helicase 7 | 575 | 647 | - | - | |
| Stsc271875g00045 | 708 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 202 | 481 | IPR027417 | - | |
| Stsc271875g00045 | 708 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 366 | 508 | IPR001650 | - | |
| Stsc271875g00045 | 708 | SMART | ultradead3 | 143 | 355 | IPR014001 | - | |
| Stsc271875g00045 | 708 | Pfam | DEAD/DEAH box helicase | 148 | 325 | IPR011545 | GO:0003676|GO:0005524 | |
| Stsc271875g00045 | 708 | SMART | helicmild6 | 392 | 469 | IPR001650 | - | |
| Stsc271875g00045 | 708 | MobiDBLite | consensus disorder prediction | 15 | 33 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc271875g00045 | Stsc-Chr271875 | 220768 | 225209 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc271875g00045 | 109 | 475 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 30.831 | 3.07e-40 | 151 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc271875g00045 | K16911 | - | jre:108998595 | 920.613 |