Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271875g00030 ATGGAGCTTCAATTAGGTTTGGGTCTCCCAATTACTCATGATGATCATCATCATTCCATAGAGGGTTGTGAATTGTGGAGGAGATGTAGGTTTAGTAGTGATGATGATGAAAGCAAAAAGCATGGAAGAAAGAAGCGAAGCTATGAAGATTTTTCGTTTGGAGAATGTTCTTTGGAAAAGACTACTTTGCCTTTACTAGTATGGAGTGGACAGCCAAATGAGAAGGAGGAAGAAGATGATGACTCTAATGGAAACATGCATAGAAGAAACATTCACTTATCAAACAAGAATGAAAGGGAGGAAAATCATTTGGTGGGGTGGCCACCAATTAAGTCATGGAGGAAGAAAGAACAAAATCATCAATATCCTACAATAAGGGTAGGGCAAAGGAGGAACAATAATAGGATGCAAGATGAGAATCAAAATAGCAGAGAAGAGACAAAGTCTTTGTTTGTTAAGGTTCATATGGAAGGGGTAACTGTAGGAAGGAAGATTGATTTGATGCTTTACAATTCTTATCAGACTCTTACACATACTTTGCTTACTATGTTTGCTAAATACCAAAATTTAGAGGAAGATGGAGCAAGTTATAAACTCACATTTCAGAATGAACAAGGGGATTGGTTACTTGCTAGACATGTTCCATGGCAATCGTTCATTGGTACAGTTCGGCGTTTGGCGATATTAAGGAATGAAAAATAA 702 0.3746 MELQLGLGLPITHDDHHHSIEGCELWRRCRFSSDDDESKKHGRKKRSYEDFSFGECSLEKTTLPLLVWSGQPNEKEEEDDDSNGNMHRRNIHLSNKNEREENHLVGWPPIKSWRKKEQNHQYPTIRVGQRRNNNRMQDENQNSREETKSLFVKVHMEGVTVGRKIDLMLYNSYQTLTHTLLTMFAKYQNLEEDGASYKLTFQNEQGDWLLARHVPWQSFIGTVRRLAILRNEK 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271875g00030 233 Gene3D - 145 233 - -
Stsc271875g00030 233 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 232 IPR003311 GO:0005634|GO:0006355
Stsc271875g00030 233 Pfam AUX/IAA family 3 231 IPR033389 -
Stsc271875g00030 233 ProSiteProfiles PB1 domain profile. 149 233 IPR000270 GO:0005515
Stsc271875g00030 233 MobiDBLite consensus disorder prediction 67 96 - -
Stsc271875g00030 233 MobiDBLite consensus disorder prediction 80 96 - -
Stsc271875g00030 233 Coils Coil 126 146 - -
Stsc271875g00030 233 SUPERFAMILY CAD & PB1 domains 140 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271875g00030 Stsc-Chr271875 141114 143052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271875g00030 152 233 B3 DNA Binding Superfamily AT1G59750 32.927 6.51e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc271875g00030 AUX_IAA 6.9e-25 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271875g00030 K14484 - aip:107611938 368.237