Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271875g00021 ATGACAGTCAATGATTCACTGGGTGTGTCCCAGTCCATGAGCGATGATAGCAATGGCATGACCTTAGTGTCCAAAGATGGAGTATTTGAGCTTGGCTTCTTCAGCCCCGGAAGTTCAATGAAGCGTTACCTGGGTATTTGGTATAAGAAAAGTTCCAATACTGTTGTTTGGGTTGCCAACAGGGACAACCCCATTGATTTTGTCTCAGCTGGAAAATTAACAATCAACAACAATGGCAATCTTATCCTCAGCCAAAATGATTCTGTTGTTTGGCTCACAAACTCTCAAAGGCAAGCACTGAATCCAGTGGCACAGCTCATGGACAGTGGCAATCTTGTGGTATGGAATAATGGAGGTGCAGAATCCAATGACATTTTGTGGCAAAGCTTTGACTATCCAACCGATAAGATATTGCCCGGGATGAAGGTTGGATGGGACCTCCAACGAGGTCTCGAATGGCGAATAACATCCTGGAAGAGTGAATCTGATCCATCCCCTGGAAATTTCTCTTGGGGTTTAAAGCTCAACAGTTATCCTGACTTTTATTTGCTCTCAGGAAAATATAAGTACAACCGGTTTGGACCATGGAATGGCCTTTACTTTAGTGGCTCACCCCAAAGATCTGATGGATACCTTAATCCATATTATGAATTCAGGTATGTCACTAGCAATGATGTAAAGTATGCCTCCAATATGGATGAGATTTACTACACTCTCTCAGTCAAGAATAATTCTCTCATCTCCAAAATTTTTCTAAGGCTAACAGACCAAAGTTTGGGAAGCTATGTATGGATGGAAAACACAAAATCCTGGACACTTTTTGAGTTTTTCGTGCGAGACCAATGTGACATCTATGGCATTTGTGGAGCATATGGGATTTGCTCAATTAATGATTCACCACTTTGCACTTGTCTAAAAGGGTTCAGTCCCAAATCACCACATACATGGGACAAGGGGAATTGGAGTGATGGATGTGAAAGGAATAAACCTTTAAGTCACAATGAAACATTTATCAAATTTGAAGATGTGAAAGTTCCAGATACTACAGATACATGGCTGGATGAGAATATGAGTCTAGATGAATGCAGAGTAAGGTGCTTGAATAACTTCTCTTGTACGGCCTTTAGTAACTCAGATATAAGAGGATCTGGTAGTGGCTGTGTCCTATGGTTTGGTGATCTTATTGATATTAGACTTTTGGAAATTACACCAACTGTTAAGCAAGATTTATATGTTCGTGTAGCTGCTTCTGACCCTCAGACCGGTAGCATCAACACAAGAAGAATAGTTGCTATAACTATTCCGGCAATTCTCGGCGGCATGCTTTTACTCTGCACTTACTTTATCTACAGAATCTGGAGGAATTTTAATGAGAAGTCAATGACTGAAACTGATATTGAAAGACATACAATGGATCTGGATCTCCCATTGTTTGATCTGCCAACAATTGCTATGTCCACCGGCAACTTTCGGTTGGAAAATAAGATTGGAGAAGGAGGTTTTGGATCTGTATATAAGGGGAAATTAGTAGATGGACAAGAAATCGCCGTAAAAAGACTTTCAAAGACCTCTGGACAAGGAATGACTGAATTCGTAAATGAAGTGAAACTAATTGCTAAACTTCAGCACAGAAATCTTGTAAGGCTTCTTGGTTGTTGCATCGAGGGACAAGAAAAGTTATTGATTTATGAATACATGGCTAATGGTAGCCTTGACTCTTTCATCTTTGATCATACCAAAGGTAAATTGTTAAACTGGCCCCAACGTTTTCACATAATACTCGGAATTGCTAAGGGGCTTTTATATCTTCATCAAGATTCTCGATTAAGGATAATTCATAGAGATCTCAAAGCAAGTAATGTTTTACTTGATGACAAGTTGAATCCAAAAATATCTGATTTTGGAATGGCTAAAGCTTTTGGAGGAGATCAAACCGAAGGAAACACAAATAGAGTAGTTGGAACTTATGGGTACATGGCACCTGAATATGCAGTTGATGGACTATTTTCTATAAAATCTGATGTCTTCAGCTTCGGTATTTTATTATTGGAGATTATATGTGGGAACAAGAATAGAGCTCTCTCCTATGGAAACAAAACATACAACCTTGTTGGTTATGCATGGACACTTTGGAAGGAGGGCAAGGCTTTACAATTAATTGAATCCAACATTAAGGATTCATGCATCGACTCGGAAGTATTGCGTTGCATCCAAGTTAGTCTAGTTTGCGTGCAACGTTACCCGGAGGATAGGCCTACCATGACCTCAGTGATTCGGATGTTAGATAGAGAGATGGAACTGGTTGACCCTAAAGAGCCTGGTTTCTTTCCAAGGAAGGTTTCCAATGAAGCAACAAATCAAAATGAAATAAGCCTAAACAATGAGCTAAGTGTGACTTCTTTAGATGGACGATGA 2415 0.3975 MTVNDSLGVSQSMSDDSNGMTLVSKDGVFELGFFSPGSSMKRYLGIWYKKSSNTVVWVANRDNPIDFVSAGKLTINNNGNLILSQNDSVVWLTNSQRQALNPVAQLMDSGNLVVWNNGGAESNDILWQSFDYPTDKILPGMKVGWDLQRGLEWRITSWKSESDPSPGNFSWGLKLNSYPDFYLLSGKYKYNRFGPWNGLYFSGSPQRSDGYLNPYYEFRYVTSNDVKYASNMDEIYYTLSVKNNSLISKIFLRLTDQSLGSYVWMENTKSWTLFEFFVRDQCDIYGICGAYGICSINDSPLCTCLKGFSPKSPHTWDKGNWSDGCERNKPLSHNETFIKFEDVKVPDTTDTWLDENMSLDECRVRCLNNFSCTAFSNSDIRGSGSGCVLWFGDLIDIRLLEITPTVKQDLYVRVAASDPQTGSINTRRIVAITIPAILGGMLLLCTYFIYRIWRNFNEKSMTETDIERHTMDLDLPLFDLPTIAMSTGNFRLENKIGEGGFGSVYKGKLVDGQEIAVKRLSKTSGQGMTEFVNEVKLIAKLQHRNLVRLLGCCIEGQEKLLIYEYMANGSLDSFIFDHTKGKLLNWPQRFHIILGIAKGLLYLHQDSRLRIIHRDLKASNVLLDDKLNPKISDFGMAKAFGGDQTEGNTNRVVGTYGYMAPEYAVDGLFSIKSDVFSFGILLLEIICGNKNRALSYGNKTYNLVGYAWTLWKEGKALQLIESNIKDSCIDSEVLRCIQVSLVCVQRYPEDRPTMTSVIRMLDREMELVDPKEPGFFPRKVSNEATNQNEISLNNELSVTSLDGR 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271875g00021 804 ProSitePatterns Protein kinases ATP-binding region signature. 496 518 IPR017441 GO:0005524
Stsc271875g00021 804 ProSiteProfiles PAN/Apple domain profile. 325 415 IPR003609 -
Stsc271875g00021 804 SUPERFAMILY alpha-D-mannose-specific plant lectins 55 164 IPR036426 -
Stsc271875g00021 804 Gene3D - 1 130 IPR036426 -
Stsc271875g00021 804 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 752 - -
Stsc271875g00021 804 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 130 - -
Stsc271875g00021 804 CDD PAN_AP_plant 325 415 - -
Stsc271875g00021 804 SUPERFAMILY Protein kinase-like (PK-like) 474 788 IPR011009 -
Stsc271875g00021 804 SMART ntp_6 332 414 IPR003609 -
Stsc271875g00021 804 CDD STKc_IRAK 496 763 - -
Stsc271875g00021 804 Gene3D Transferase(Phosphotransferase) domain 1 566 771 - -
Stsc271875g00021 804 Pfam Protein tyrosine and serine/threonine kinase 491 761 IPR001245 GO:0004672|GO:0006468
Stsc271875g00021 804 CDD B_lectin 13 133 IPR001480 -
Stsc271875g00021 804 ProSiteProfiles Protein kinase domain profile. 490 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271875g00021 804 SMART blect_4 13 133 IPR001480 -
Stsc271875g00021 804 ProSiteProfiles Bulb-type lectin domain profile. 7 127 IPR001480 -
Stsc271875g00021 804 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Stsc271875g00021 804 SMART serkin_6 490 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271875g00021 804 PIRSF SRK 2 804 IPR024171 GO:0004674
Stsc271875g00021 804 Gene3D Phosphorylase Kinase; domain 1 464 565 - -
Stsc271875g00021 804 Pfam PAN-like domain 332 397 IPR003609 -
Stsc271875g00021 804 FunFam receptor-like serine/threonine-protein kinase SD1-8 462 565 - -
Stsc271875g00021 804 Pfam S-locus glycoprotein domain 192 312 IPR000858 GO:0048544
Stsc271875g00021 804 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 566 769 - -
Stsc271875g00021 804 Pfam D-mannose binding lectin 54 159 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271875g00021 Stsc-Chr271875 98223 101293 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271875g00021 429 778 Receptor kinase-like Gene Family AT4G23190 51.977 5.11e-122 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc271875g00021 PK_Tyr_Ser-Thr 1.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271875g00021 - - gmx:100812007 1040.02