Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271875g00020 ATGACAGTCAATGATTCACTGGGTGTGTCCCAGTCCATGAGCGATGATAGCAATGGCATGACCTTAGTGTCCAAAGATGGAGTATTTGAGCTTGGCTTCTTCAGCCCCGGAAGTTCAATGAAGCGTTACCTGGGTATTTGGTATAAGAAAAGTTCCAATACTGTTGTTTGGGTTGCCAACAGGGACAACCCCATTGATTTTGTCTCAGCTGGAAAATTAACAATCAACAACAATGGCAATCTTATCCTCAGCCAAAATGATTCTGTTGTTTGGCTCACAAACTCTCAAAGGCAAGCACTGAATCCAGTGGCACAGCTCATGGACAGTGGCAATCTTGTGGTATGGAATAATGGAGGTGCAGAATCCAATGACATTTTGTGGCAAAGCTTTGACTATCCAACCGATAAGATATTGCCCGGGATGAAGGTTGGATGGGACCTCCAACGAGGTCTCGAATGGCGAATAACATCCTGGAAGAGTGAATCTGATCCATCCCCTGGAAATTTCTCTTGGGGTTTAAAGCTCAACAGTTATCCTGACTTTTATTTGCTCTCAGGAAAATATAAGTACAACCGGTTTGGACCATGGAATGGCCTTTACTTTAGTGGCTCACCCCAAAGATCTGATGGATACCTTAATCCATATTATGAATTCAGGTATGTCACTAGCAATGATGTAAAGTATGCCTCCAATATGGATGAGATTTACTACACTCTCTCAGTCAAGAATAATTCTCTCATCTCCAAAATTTTTCTAAGGCTAACAGACCAAAGTTTGGGAAGCTATGTATGGATGGAAAACACAAAATCCTGGACACTTTTTGAGTTTTTCGTGCGAGACCAATGTGACATCTATGGCATTTGTGGAGCATATGGGATTTGCTCAATTAATGATTCACCACTTTGCACTTGTCTAAAAGGGTTCAGTCCCAAATCACCACATACATGGGACAAGGGGAATTGGAGTGATGGATGTGAAAGGAATAAACCTTTAAGTCACAATGAAACATTTATCAAATTTGAAGATGTGAAAGTTCCAGATACTACAGATACATGGCTGGATGAGAATATGAGTCTAGATGAATGCAGAGTAAGGTGCTTGAATAACTTCTCTTGTACGGCCTTTAGTAACTCAGATATAAGAGGATCTGGTAGTGGCTGTGTCCTATGGTTTGGTGATCTTATTGATATTAGACTTTTGGAAATTACACCAACTGTTAAGCAAGATTTATATGTTCGTGTAGCTGCTTCTGACCCTCAGACCGGTAGCATCAACACAAGAAGAATAGTTGCTATAACTATTCCGGCAATTCTCGGCGGCATGCTTTTACTCTGCACTTACTTTATCTACAGAATCTGGAGGAATTTTAATGAGAAGTCAATGACTGAAACTGATATTGAAAGACATACAATGGATCTGGATCTCCCATTGTTTGATCTGCCAACAATTGCTATGTCCACCGGCAACTTTCGGTTGGAAAATAAGATTGGAGAAGGAGGTTTTGGATCTGTATATAAGGGGAAATTAGTAGATGGACAAGAAATCGCCGTAAAAAGACTTTCAAAGACCTCTGGACAAGGAATGACTGAATTCGTAAATGAAGTGAAACTAATTGCTAAACTTCAGCACAGAAATCTTGTAAGGCTTCTTGGTTGTTGCATCGAGGGACAAGAAAAGTTATTGATTTATGAATACATGGCTAATGGTAGCCTTGACTCTTTCATCTTTGATCATACCAAAGGTAAATTGTTAAACTGGCCCCAACGTTTTCACATAATACTCGGAATTGCTAAGGGGCTTTTATATCTTCATCAAGATTCTCGATTAAGGATAATTCATAGAGATCTCAAAGCAAGTAATGTTTTACTTGATGACAAGTTGAATCCAAAAATATCTGATTTTGGAATGGCTAAAGCTTTTGGAGGAGATCAAACCGAAGGAAACACAAATAGAGTAGTTGGAACTTATGGGTACATGGCACCAGAATATGCGGTTGATGGACTATTTTCTATAAAATCCGATGTCTTCAGCTTCGGTATTTTATTGTTGGAGATTATATGTGGGAACAAGAATAGAGCTCTCTCCTATGGAAACAAAACATACAACCTTGTTGGTTATGCATGGACACTTTGGAAGGAGGGAAAGGCTTTACAATTAATTGACTCCAACATTAAGGATTCATGCATGGACTCAAAGTGTTGCGGTGTATCCAAGTTAGTCTAG 2223 0.3959 MTVNDSLGVSQSMSDDSNGMTLVSKDGVFELGFFSPGSSMKRYLGIWYKKSSNTVVWVANRDNPIDFVSAGKLTINNNGNLILSQNDSVVWLTNSQRQALNPVAQLMDSGNLVVWNNGGAESNDILWQSFDYPTDKILPGMKVGWDLQRGLEWRITSWKSESDPSPGNFSWGLKLNSYPDFYLLSGKYKYNRFGPWNGLYFSGSPQRSDGYLNPYYEFRYVTSNDVKYASNMDEIYYTLSVKNNSLISKIFLRLTDQSLGSYVWMENTKSWTLFEFFVRDQCDIYGICGAYGICSINDSPLCTCLKGFSPKSPHTWDKGNWSDGCERNKPLSHNETFIKFEDVKVPDTTDTWLDENMSLDECRVRCLNNFSCTAFSNSDIRGSGSGCVLWFGDLIDIRLLEITPTVKQDLYVRVAASDPQTGSINTRRIVAITIPAILGGMLLLCTYFIYRIWRNFNEKSMTETDIERHTMDLDLPLFDLPTIAMSTGNFRLENKIGEGGFGSVYKGKLVDGQEIAVKRLSKTSGQGMTEFVNEVKLIAKLQHRNLVRLLGCCIEGQEKLLIYEYMANGSLDSFIFDHTKGKLLNWPQRFHIILGIAKGLLYLHQDSRLRIIHRDLKASNVLLDDKLNPKISDFGMAKAFGGDQTEGNTNRVVGTYGYMAPEYAVDGLFSIKSDVFSFGILLLEIICGNKNRALSYGNKTYNLVGYAWTLWKEGKALQLIDSNIKDSCMDSKCCGVSKLV 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271875g00020 740 ProSitePatterns Protein kinases ATP-binding region signature. 496 518 IPR017441 GO:0005524
Stsc271875g00020 740 ProSiteProfiles PAN/Apple domain profile. 325 415 IPR003609 -
Stsc271875g00020 740 FunFam receptor-like serine/threonine-protein kinase SD1-8 462 565 - -
Stsc271875g00020 740 Gene3D Transferase(Phosphotransferase) domain 1 566 740 - -
Stsc271875g00020 740 CDD PAN_AP_plant 325 415 - -
Stsc271875g00020 740 SMART ntp_6 332 414 IPR003609 -
Stsc271875g00020 740 PIRSF SRK 2 739 IPR024171 GO:0004674
Stsc271875g00020 740 ProSiteProfiles Protein kinase domain profile. 490 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271875g00020 740 Pfam Protein tyrosine and serine/threonine kinase 491 690 IPR001245 GO:0004672|GO:0006468
Stsc271875g00020 740 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 704 - -
Stsc271875g00020 740 Pfam PAN-like domain 332 397 IPR003609 -
Stsc271875g00020 740 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 130 - -
Stsc271875g00020 740 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 566 739 - -
Stsc271875g00020 740 SMART serkin_6 490 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271875g00020 740 CDD B_lectin 13 133 IPR001480 -
Stsc271875g00020 740 Gene3D Phosphorylase Kinase; domain 1 464 565 - -
Stsc271875g00020 740 SUPERFAMILY Protein kinase-like (PK-like) 472 732 IPR011009 -
Stsc271875g00020 740 SMART blect_4 13 133 IPR001480 -
Stsc271875g00020 740 ProSiteProfiles Bulb-type lectin domain profile. 7 127 IPR001480 -
Stsc271875g00020 740 SUPERFAMILY alpha-D-mannose-specific plant lectins 55 164 IPR036426 -
Stsc271875g00020 740 Gene3D - 1 130 IPR036426 -
Stsc271875g00020 740 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Stsc271875g00020 740 Pfam D-mannose binding lectin 54 159 IPR001480 -
Stsc271875g00020 740 Pfam S-locus glycoprotein domain 192 312 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271875g00020 Stsc-Chr271875 93378 101293 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271875g00020 429 732 Receptor kinase-like Gene Family AT4G23230 53.595 8.39e-105 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc271875g00020 PK_Tyr_Ser-Thr 3.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271875g00020 - - gmx:100812007 948.732